Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_G04_e127_14.seq
(1506 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0983 - 26559772-26559915,26560149-26560251,26560335-265605... 36 0.083
02_01_0577 + 4280590-4281225,4281749-4282102,4282214-4282412,428... 36 0.083
03_01_0369 - 2863159-2863491,2864149-2864214,2865045-2865140,286... 32 1.0
09_03_0147 + 12763526-12763815,12763938-12764067,12764185-127644... 32 1.4
04_03_0824 + 20086639-20087263,20087282-20087463,20087569-200877... 31 1.8
09_06_0270 + 21954652-21955245,21955827-21955964,21956050-219562... 31 2.4
11_02_0128 - 8620958-8621248,8622986-8623576 29 9.6
>06_03_0983 -
26559772-26559915,26560149-26560251,26560335-26560548,
26563352-26563550,26564509-26564862,26565430-26566086
Length = 556
Score = 35.9 bits (79), Expect = 0.083
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = -1
Query: 684 QHLDLKRGDVVCVFMPNCGEYVWTWLGMAKLSAVSALINSNLRHKPLLHCIQVAKAKAIV 505
+ L + +GDVV + NC E+ +T+LG A+L A + N + A A+ IV
Sbjct: 74 RRLGVGKGDVVMSLLRNCPEFAFTFLGAARLGAATTTANPFYTPHEIHRQASAAGARVIV 133
>02_01_0577 +
4280590-4281225,4281749-4282102,4282214-4282412,
4284991-4285204,4285299-4285401,4285481-4285639
Length = 554
Score = 35.9 bits (79), Expect = 0.083
Identities = 21/76 (27%), Positives = 40/76 (52%)
Frame = -1
Query: 732 Y*QMASKSNQVARVMQQHLDLKRGDVVCVFMPNCGEYVWTWLGMAKLSAVSALINSNLRH 553
Y ++ S S + A +++ + + +GDVV + NC E+ +++LG A+L A + N
Sbjct: 55 YAEVESASRRAAAGLRR-MGVGKGDVVMSLLRNCPEFAFSFLGAARLGAATTTANPFYTP 113
Query: 552 KPLLHCIQVAKAKAIV 505
+ + A A+ IV
Sbjct: 114 HEVHRQAEAAGARVIV 129
>03_01_0369 -
2863159-2863491,2864149-2864214,2865045-2865140,
2865530-2865632,2865771-2865838,2866570-2866712,
2867050-2867242,2867602-2867640,2867742-2867807,
2868617-2869651
Length = 713
Score = 32.3 bits (70), Expect = 1.0
Identities = 16/74 (21%), Positives = 32/74 (43%)
Frame = -1
Query: 726 QMASKSNQVARVMQQHLDLKRGDVVCVFMPNCGEYVWTWLGMAKLSAVSALINSNLRHKP 547
++ S A + ++ GD V + PNC Y + + L AV +N + +
Sbjct: 65 ELRSAVLSTAVALSSRAGVRPGDAVLLLAPNCVLYPVCFFAVTALGAVGTTVNPDYTPRE 124
Query: 546 LLHCIQVAKAKAIV 505
+ + A+AK ++
Sbjct: 125 IAKQVSDARAKLVI 138
>09_03_0147 +
12763526-12763815,12763938-12764067,12764185-12764435,
12764546-12764750,12764878-12764918,12765006-12765131,
12765429-12765502,12765671-12765891,12766251-12766345,
12766463-12766679,12766781-12766906,12766988-12767086,
12767171-12767380,12767496-12767606
Length = 731
Score = 31.9 bits (69), Expect = 1.4
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -1
Query: 681 HLDLKRGDVVCVFMPNCGEYVWTWLGMAKL--SAVSALINSNLRHKPLLHCIQVAK 520
H+D++RGDVV + N G + WL A L A AL N +L +Q AK
Sbjct: 395 HMDIRRGDVV-AWPTNLGWMMGPWLVYASLLNGASMALYNGSLNSSGFAKFVQDAK 449
>04_03_0824 +
20086639-20087263,20087282-20087463,20087569-20087724,
20087867-20087989,20088079-20088247,20088384-20088466,
20088641-20088742,20089246-20089359,20089735-20089811,
20089884-20089962,20090060-20090128,20090235-20090410,
20090460-20090561,20090678-20090768,20090878-20090976,
20091141-20091326
Length = 810
Score = 31.5 bits (68), Expect = 1.8
Identities = 21/91 (23%), Positives = 43/91 (47%)
Frame = -1
Query: 750 QITKELY*QMASKSNQVARVMQQHLDLKRGDVVCVFMPNCGEYVWTWLGMAKLSAVSALI 571
Q K Y ++ +K Q+A ++ + + +GD V +++P E L A++ AV +++
Sbjct: 306 QDAKLTYSELLNKVCQLANYLKS-VGVGKGDAVVIYLPMLMELPIAMLACARIGAVHSVV 364
Query: 570 NSNLRHKPLLHCIQVAKAKAIVYSDHLADGK 478
+ L I K K ++ + + GK
Sbjct: 365 FAGFSADALAQRIIDCKPKVVITCNAVKRGK 395
>09_06_0270 +
21954652-21955245,21955827-21955964,21956050-21956295,
21956407-21956520,21956633-21956815,21956926-21957143,
21957210-21957246,21957865-21958219,21958284-21958337,
21958513-21958529
Length = 651
Score = 31.1 bits (67), Expect = 2.4
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +2
Query: 386 RIKKLKTILYSENLYETRAQPRA*F*FQYINLPSAKWSE*TIAF 517
RIK LK IL+S N+YET A ++++P+ + + T++F
Sbjct: 198 RIKFLKEILFSSNVYETLISRNAKRMMMHLSIPADESLQSTLSF 241
>11_02_0128 - 8620958-8621248,8622986-8623576
Length = 293
Score = 29.1 bits (62), Expect = 9.6
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 690 MQQHLDLKRGDVVCVFMPNCGEYVWTWL-GMAKLSAVSALINSNLRHK 550
+Q+H + GDVV +P CG TWL +A +A A RH+
Sbjct: 87 IQRHFAPRDGDVVLASLPKCGT---TWLKALAFATAARAAYPPRRRHR 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,888,101
Number of Sequences: 37544
Number of extensions: 606464
Number of successful extensions: 1234
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4826476928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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