Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_G04_e127_14.seq
         (1506 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33495| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   7e-12
SB_30263| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.048
SB_5347| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   1.4  
SB_58969| Best HMM Match : Avidin (HMM E-Value=3.7)                    30   4.2  
SB_43771| Best HMM Match : AMP-binding (HMM E-Value=0.041)             30   4.2  
SB_41907| Best HMM Match : Reprolysin (HMM E-Value=9.2e-05)            30   4.2  
SB_25711| Best HMM Match : Oxidored_q1_N (HMM E-Value=3)               30   4.2  
SB_6508| Best HMM Match : AMP-binding (HMM E-Value=2.8026e-45)         29   9.7  

>SB_33495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 69.3 bits (162), Expect = 7e-12
 Identities = 29/76 (38%), Positives = 48/76 (63%)
 Frame = -1

Query: 711 SNQVARVMQQHLDLKRGDVVCVFMPNCGEYVWTWLGMAKLSAVSALINSNLRHKPLLHCI 532
           +N++A   +      +GDV+ + + N  E++  WLG++K+  +SALIN+NL    LLHCI
Sbjct: 119 ANRIANYFKSQ-GYAKGDVIALILENRPEFILIWLGLSKIGVISALINTNLHQDSLLHCI 177

Query: 531 QVAKAKAIVYSDHLAD 484
             A +KAI++  + AD
Sbjct: 178 SAANSKAIIFGSNFAD 193


>SB_30263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 976

 Score = 36.7 bits (81), Expect = 0.048
 Identities = 20/82 (24%), Positives = 43/82 (52%)
 Frame = -1

Query: 726 QMASKSNQVARVMQQHLDLKRGDVVCVFMPNCGEYVWTWLGMAKLSAVSALINSNLRHKP 547
           Q+    N++A +++ H  +K+GD+VC++MP     V   L  A++ A  +++ +      
Sbjct: 123 QLYGMVNRMANMLKCH-GVKKGDIVCLYMPVSPLAVAAMLACARIGAPHSVVFAGFSADA 181

Query: 546 LLHCIQVAKAKAIVYSDHLADG 481
           L   I  A+A+ ++ ++    G
Sbjct: 182 LASRINDAQAETVITANQAVRG 203


>SB_5347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 20/63 (31%), Positives = 35/63 (55%)
 Frame = -1

Query: 753 KQITKELY*QMASKSNQVARVMQQHLDLKRGDVVCVFMPNCGEYVWTWLGMAKLSAVSAL 574
           KQIT   Y ++  +  + A V++    +K+GD V ++MP   E V   L  A+L AV ++
Sbjct: 231 KQIT---YGELLKQVCKFANVLESK-GVKKGDRVAIYMPMIMELVIAMLACARLGAVHSI 286

Query: 573 INS 565
           + +
Sbjct: 287 VET 289


>SB_58969| Best HMM Match : Avidin (HMM E-Value=3.7)
          Length = 706

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +1

Query: 199 HISDYQSARVIYSIKLRVDMNKRIYTQYIIYTQHT 303
           H++D Q+AR IY+  +      RIYTQ++  ++HT
Sbjct: 236 HVNDSQTAR-IYTQHVNDSQTARIYTQHVNDSRHT 269


>SB_43771| Best HMM Match : AMP-binding (HMM E-Value=0.041)
          Length = 339

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 15/53 (28%), Positives = 31/53 (58%)
 Frame = -1

Query: 726 QMASKSNQVARVMQQHLDLKRGDVVCVFMPNCGEYVWTWLGMAKLSAVSALIN 568
           ++  +++Q+A  +   L +KRGD V ++ PN  E+V +  G A++  +   +N
Sbjct: 81  ELREEADQLAASLLS-LGIKRGDRVGIWGPNMREWVISQFGTARIGVILVNVN 132


>SB_41907| Best HMM Match : Reprolysin (HMM E-Value=9.2e-05)
          Length = 656

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 870 SPKVPGGTRASSWSEIGRGPLERFV 796
           S  VPGG RA SWS   R  L+ F+
Sbjct: 370 STAVPGGKRAQSWSPCSRRDLQEFL 394


>SB_25711| Best HMM Match : Oxidored_q1_N (HMM E-Value=3)
          Length = 166

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 870 SPKVPGGTRASSWSEIGRGPLERFV 796
           S  VPGG RA SWS   R  L+ F+
Sbjct: 56  STAVPGGKRAQSWSPCSRRDLQEFL 80


>SB_6508| Best HMM Match : AMP-binding (HMM E-Value=2.8026e-45)
          Length = 1038

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -1

Query: 678 LDLKRGDVVCVFMPNCGEYVWTWLGMAKLSAVSALINSNLRHKPLLHCIQVAKAKAIV 505
           L++ +GD V ++MP   + V   L  A++ A+ +++        L   I+ A+ + IV
Sbjct: 158 LNVGKGDRVVIYMPMVPQAVIAMLACARIGAIHSVVFGGFAAAELARRIEHAEPRVIV 215


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,078,285
Number of Sequences: 59808
Number of extensions: 666901
Number of successful extensions: 1275
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4882915232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)