Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_G04_e127_14.seq
         (1506 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    26   2.5  

>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +1

Query: 88  SPPKFAEAVKALPVNSIS*VKKKSFIDAASSMNPLKT-HISDYQSARVIYSIKLRVDMNK 264
           SP +  E  +  PV  ++   ++  +D ASS+NP K   +    +A +  +I+   D+ K
Sbjct: 403 SPGQVLERGEEEPVRDVN---EQELLDIASSLNPRKAPGLDGVPNAALTAAIRKHTDIFK 459

Query: 265 RIYTQ 279
           +++ +
Sbjct: 460 KLFQE 464


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,190,658
Number of Sequences: 2352
Number of extensions: 22147
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 176375430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)