Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_G04_e127_14.seq
         (1506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   3.9  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   5.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   5.2  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 643 YAQLWRVCMDVARNGQAQC 587
           Y+ LWRVC+ ++   + +C
Sbjct: 100 YSGLWRVCVAISSRMEYEC 118


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP57-1
            protein.
          Length = 544

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 1032 EE*IIQYKGLEKXVXXQNFGTFISR 958
            EE  +QY+G +  +  Q+FG  +S+
Sbjct: 292  EENNVQYEGSQDILNTQSFGKVVSK 316


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 287 YIHSIRYSVT*RFLLNHTTRKPR*RTSF 370
           Y +S RY +   F+L+H    PR  +SF
Sbjct: 320 YKYSKRYKMAVAFMLSHPFGTPRIMSSF 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 326,880
Number of Sequences: 438
Number of extensions: 6815
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52635000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)