BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030712_G03_e119_13.seq (1507 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_40663| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.3 >SB_40663| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 416 Score = 29.5 bits (63), Expect = 7.3 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%) Frame = -1 Query: 424 SNHQGF--SHQ*CQTTEEKGHHGNNLNTNASQEWCI 323 +N+QGF SH C T +G H NN S + C+ Sbjct: 142 TNNQGFYASHDICVHTNNQGVHANNQGFYTSHDICV 177 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 27,639,022 Number of Sequences: 59808 Number of extensions: 408824 Number of successful extensions: 2214 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 2111 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2204 length of database: 16,821,457 effective HSP length: 85 effective length of database: 11,737,777 effective search space used: 4882915232 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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