Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_G02_e111_14.seq
         (1488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical ...    51   2e-06
L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell m...    31   2.8  
L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell m...    31   2.8  
L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell m...    31   2.8  
AF022980-2|AAG24188.3|  343|Caenorhabditis elegans Hypothetical ...    31   2.8  

>AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical
           protein C09D4.2 protein.
          Length = 254

 Score = 51.2 bits (117), Expect = 2e-06
 Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 7/127 (5%)
 Frame = +1

Query: 331 LRDDQPNRN-CMCKGAACVCCVEFNITFVDLGGPGCVHMKYLSPEEGFSVKVSYGKSLIH 507
           LR    N N C C    C CC+E ++   +     CV+  Y     G  + +        
Sbjct: 128 LRTGSSNENGCACVHGNCACCLEISVP--EFRHSVCVNATYNPVSIGLDLSIGVDGHYF- 184

Query: 508 NSKINGTNPKPIC--LEVFGK--FAQVCAKFS--DLAPTSDGLRGCLELEPKLLGEGQLD 669
           + +I+  NP P+C  L + G    A VC  F+  DL      L GC++ E +L+    L 
Sbjct: 185 SEEISLRNPPPVCFSLPIPGAEHIAGVCVAFTKLDLDKKEKILSGCMDFEVELIHLRVLT 244

Query: 670 FPIGCFK 690
           F +GCF+
Sbjct: 245 FKLGCFR 251


>L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform b protein.
          Length = 650

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -3

Query: 211 WSVV--LKKKLRQNYEFLIHSKCIIEERSSLLVRRMFERGER 92
           W+V   LK+   +N+  L+   CI+EE   L ++R++E  E+
Sbjct: 214 WTVADTLKQLAEKNHIALMEDHCIVEEYPELYIKRVYEDHEK 255


>L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform a protein.
          Length = 667

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -3

Query: 211 WSVV--LKKKLRQNYEFLIHSKCIIEERSSLLVRRMFERGER 92
           W+V   LK+   +N+  L+   CI+EE   L ++R++E  E+
Sbjct: 231 WTVADTLKQLAEKNHIALMEDHCIVEEYPELYIKRVYEDHEK 272


>L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform c protein.
          Length = 779

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -3

Query: 211 WSVV--LKKKLRQNYEFLIHSKCIIEERSSLLVRRMFERGER 92
           W+V   LK+   +N+  L+   CI+EE   L ++R++E  E+
Sbjct: 343 WTVADTLKQLAEKNHIALMEDHCIVEEYPELYIKRVYEDHEK 384


>AF022980-2|AAG24188.3|  343|Caenorhabditis elegans Hypothetical
           protein T03D3.5 protein.
          Length = 343

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 632 NWNLNSLGKDNSTSRSVVSNQHLEEWKWKIRPLNQ 736
           N N+ +  +D S   S +S Q   +WK+++ P+N+
Sbjct: 251 NNNIETKSEDPSPENSKISTQMFTDWKYQLLPINE 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,974,279
Number of Sequences: 27780
Number of extensions: 469962
Number of successful extensions: 997
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4277144658
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)