Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_G02_e111_14.seq
         (1488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   5.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   5.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   6.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   6.8  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 482 FHMGKVLYITQKSTGQIRNQYVW 550
           FH+ ++LY+ + ST    NQ+V+
Sbjct: 276 FHVQRLLYVYEDSTYDDINQWVY 298


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 460 EEGFSVKVSYGKSLIHNSKINGTNPKP 540
           EE  ++++  G+  +HN   NG+   P
Sbjct: 300 EERLTLRIHRGRGSVHNGSNNGSPRSP 326


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 939  QIXPKGELXISNIPXQ 986
            QI P GEL +SN+  Q
Sbjct: 1362 QILPSGELMLSNLQSQ 1377


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 939  QIXPKGELXISNIPXQ 986
            QI P GEL +SN+  Q
Sbjct: 1358 QILPSGELMLSNLQSQ 1373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 316,764
Number of Sequences: 438
Number of extensions: 5913
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 51917250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)