Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_G01_e103_13.seq
(1451 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 151 1e-36
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 149 4e-36
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 138 8e-33
09_02_0235 + 6122145-6122206,6122408-6122417,6123515-6123549,612... 31 1.7
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244... 30 4.0
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557... 30 4.0
09_02_0036 + 3217163-3217584,3217752-3218322 30 4.0
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 151 bits (366), Expect = 1e-36
Identities = 72/137 (52%), Positives = 91/137 (66%), Gaps = 3/137 (2%)
Frame = +1
Query: 82 SRFWYFLRQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLS 261
S+FWYFLR+LKK KK+ G+I++I EI EK+P IKN+GIWLRY+SR+G HNMY+EYRD +
Sbjct: 41 SKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTT 100
Query: 262 VGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRV 432
+ GAV Q Y +M +RHR R IQIIK + C+R KQFH S I FPL R
Sbjct: 101 LNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRP 160
Query: 433 HQYKRLNTFAYKRPSTY 483
K TF RP+ +
Sbjct: 161 PTRKLKTTFKASRPNLF 177
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 149 bits (362), Expect = 4e-36
Identities = 70/137 (51%), Positives = 91/137 (66%), Gaps = 3/137 (2%)
Frame = +1
Query: 82 SRFWYFLRQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLS 261
S+FWYFLR+LKK KK+ G++++I EI E++P IKN+GIWLRY+SR+G HNMY+EYRD +
Sbjct: 41 SKFWYFLRKLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTT 100
Query: 262 VGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRV 432
+ GAV Q Y +M +RHR R IQIIK + C+R KQFH S I FPL R
Sbjct: 101 LNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNSNIKFPLVYRKVRP 160
Query: 433 HQYKRLNTFAYKRPSTY 483
K TF RP+ +
Sbjct: 161 PTRKLKTTFKASRPNLF 177
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 138 bits (335), Expect = 8e-33
Identities = 66/133 (49%), Positives = 86/133 (64%), Gaps = 3/133 (2%)
Frame = +1
Query: 94 YFLRQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGA 273
YFLR+LKK KK+ G++++I EI E++P IKN+GIWLRY+SR+G HNMY+EYRD ++ GA
Sbjct: 62 YFLRKLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA 121
Query: 274 VTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYK 444
V Q Y +M +RHR R IQIIK + C+R KQFH I FPL R K
Sbjct: 122 VEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNGSIKFPLVYRKVRPPTRK 181
Query: 445 RLNTFAYKRPSTY 483
TF RP+ +
Sbjct: 182 LKTTFKASRPNLF 194
>09_02_0235 +
6122145-6122206,6122408-6122417,6123515-6123549,
6124422-6124842,6124978-6125412
Length = 320
Score = 31.5 bits (68), Expect = 1.7
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = -3
Query: 258 QVTVFTVHIVDTRARLVTQPDTKVLNLNRTLFWNFLDGYNFTSSLFELLQLPQEIPE 88
+++ F V I +L+ P+T VLNL + +F+ T+ L E L +P+ I E
Sbjct: 185 EISDFDVLIGHPIEKLIDVPETGVLNLKIEIIISFVPVLQSTNCLMEPLPIPEPIKE 241
>11_06_0294 +
22022630-22024006,22024109-22024234,22024319-22024423,
22024525-22024659,22024798-22024847,22026487-22026545,
22026819-22026928,22027941-22028174,22028278-22028377,
22028699-22028829,22029834-22029914,22029970-22030128
Length = 888
Score = 30.3 bits (65), Expect = 4.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 658 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 801
L+R + PF SW N +A D+ + L LNG + + LK L
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 446
>11_06_0278 -
21854859-21855101,21855529-21855587,21855684-21855711,
21855812-21856702,21856792-21857011,21857638-21857687,
21863174-21863284,21863379-21863483,21863568-21863693,
21863796-21865187
Length = 1074
Score = 30.3 bits (65), Expect = 4.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 658 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 801
L+R + PF SW N +A D+ + L LNG + + LK L
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 451
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 4.0
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 596 ITIHWPSFYNVV-TGKTLALPNLIALQH 676
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,156,799
Number of Sequences: 37544
Number of extensions: 737052
Number of successful extensions: 1613
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1613
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4617638984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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