Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_G01_e103_13.seq
(1451 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L05093-1|AAC18781.1| 176|Homo sapiens ribosomal protein L18a pr... 209 2e-53
BC071920-1|AAH71920.1| 176|Homo sapiens ribosomal protein L18a ... 209 2e-53
BC066319-1|AAH66319.1| 176|Homo sapiens ribosomal protein L18a ... 209 2e-53
BC007512-1|AAH07512.1| 176|Homo sapiens ribosomal protein L18a ... 209 2e-53
AK222647-1|BAD96367.1| 176|Homo sapiens ribosomal protein L18a ... 209 2e-53
AC005796-1|AAC62828.1| 176|Homo sapiens ribosomal protein L18a ... 209 2e-53
X80822-1|CAA56788.1| 140|Homo sapiens protein ( H.sapiens mRNA ... 171 4e-42
AY779046-1|AAX47571.1| 136|Homo sapiens ribosomal protein L18a-... 152 3e-36
AB007175-1|BAA28596.1| 66|Homo sapiens ribosomal protein L18a ... 95 8e-19
>L05093-1|AAC18781.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 209 bits (511), Expect = 2e-53
Identities = 95/135 (70%), Positives = 111/135 (82%)
Frame = +1
Query: 82 SRFWYFLRQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLS 261
SRFWYF+ QLKK KK++GEIV ++ EKSP+++KNFGIWLRY+SRSG HNMYREYRDL+
Sbjct: 42 SRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLT 101
Query: 262 VGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQY 441
GAVTQCYRDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH SKI FPLP RV +
Sbjct: 102 TAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRR 161
Query: 442 KRLNTFAYKRPSTYF 486
+ F KRP+T+F
Sbjct: 162 QHKPRFTTKRPNTFF 176
>BC071920-1|AAH71920.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 209 bits (511), Expect = 2e-53
Identities = 95/135 (70%), Positives = 111/135 (82%)
Frame = +1
Query: 82 SRFWYFLRQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLS 261
SRFWYF+ QLKK KK++GEIV ++ EKSP+++KNFGIWLRY+SRSG HNMYREYRDL+
Sbjct: 42 SRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLT 101
Query: 262 VGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQY 441
GAVTQCYRDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH SKI FPLP RV +
Sbjct: 102 TAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRR 161
Query: 442 KRLNTFAYKRPSTYF 486
+ F KRP+T+F
Sbjct: 162 QHKPRFTTKRPNTFF 176
>BC066319-1|AAH66319.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 209 bits (511), Expect = 2e-53
Identities = 95/135 (70%), Positives = 111/135 (82%)
Frame = +1
Query: 82 SRFWYFLRQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLS 261
SRFWYF+ QLKK KK++GEIV ++ EKSP+++KNFGIWLRY+SRSG HNMYREYRDL+
Sbjct: 42 SRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLT 101
Query: 262 VGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQY 441
GAVTQCYRDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH SKI FPLP RV +
Sbjct: 102 TAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRR 161
Query: 442 KRLNTFAYKRPSTYF 486
+ F KRP+T+F
Sbjct: 162 QHKPRFTTKRPNTFF 176
>BC007512-1|AAH07512.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 209 bits (511), Expect = 2e-53
Identities = 95/135 (70%), Positives = 111/135 (82%)
Frame = +1
Query: 82 SRFWYFLRQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLS 261
SRFWYF+ QLKK KK++GEIV ++ EKSP+++KNFGIWLRY+SRSG HNMYREYRDL+
Sbjct: 42 SRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLT 101
Query: 262 VGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQY 441
GAVTQCYRDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH SKI FPLP RV +
Sbjct: 102 TAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRR 161
Query: 442 KRLNTFAYKRPSTYF 486
+ F KRP+T+F
Sbjct: 162 QHKPRFTTKRPNTFF 176
>AK222647-1|BAD96367.1| 176|Homo sapiens ribosomal protein L18a
variant protein.
Length = 176
Score = 209 bits (511), Expect = 2e-53
Identities = 95/135 (70%), Positives = 111/135 (82%)
Frame = +1
Query: 82 SRFWYFLRQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLS 261
SRFWYF+ QLKK KK++GEIV ++ EKSP+++KNFGIWLRY+SRSG HNMYREYRDL+
Sbjct: 42 SRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLT 101
Query: 262 VGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQY 441
GAVTQCYRDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH SKI FPLP RV +
Sbjct: 102 AAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRR 161
Query: 442 KRLNTFAYKRPSTYF 486
+ F KRP+T+F
Sbjct: 162 QHKPRFTTKRPNTFF 176
>AC005796-1|AAC62828.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 209 bits (511), Expect = 2e-53
Identities = 95/135 (70%), Positives = 111/135 (82%)
Frame = +1
Query: 82 SRFWYFLRQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLS 261
SRFWYF+ QLKK KK++GEIV ++ EKSP+++KNFGIWLRY+SRSG HNMYREYRDL+
Sbjct: 42 SRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLT 101
Query: 262 VGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQY 441
GAVTQCYRDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH SKI FPLP RV +
Sbjct: 102 TAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRR 161
Query: 442 KRLNTFAYKRPSTYF 486
+ F KRP+T+F
Sbjct: 162 QHKPRFTTKRPNTFF 176
>X80822-1|CAA56788.1| 140|Homo sapiens protein ( H.sapiens mRNA for
ORF. ).
Length = 140
Score = 171 bits (417), Expect = 4e-42
Identities = 77/111 (69%), Positives = 90/111 (81%)
Frame = +1
Query: 154 EIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 333
++ EKSP+++KNFGIWL Y+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQ
Sbjct: 30 QVFEKSPLRVKNFGIWLSYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQ 89
Query: 334 IIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQYKRLNTFAYKRPSTYF 486
I+KVE I + CRRP VKQFH SKI FPLP RV + + F KRP+T+F
Sbjct: 90 IMKVEEIAVSKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 140
>AY779046-1|AAX47571.1| 136|Homo sapiens ribosomal protein
L18a-like protein protein.
Length = 136
Score = 152 bits (369), Expect = 3e-36
Identities = 68/94 (72%), Positives = 80/94 (85%)
Frame = +1
Query: 82 SRFWYFLRQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLS 261
SRFWYF+ QLKK KK++GE V ++ EKSP+++KNFGIWLR +SRSG HNMYREYRDL+
Sbjct: 42 SRFWYFVSQLKKMKKSSGETVYCGQVFEKSPLRVKNFGIWLRCDSRSGTHNMYREYRDLT 101
Query: 262 VGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAA 363
GAVTQCYRDMGARHRARAHSIQI+ VE I A+
Sbjct: 102 TAGAVTQCYRDMGARHRARAHSIQIMMVEEIAAS 135
>AB007175-1|BAA28596.1| 66|Homo sapiens ribosomal protein L18a
protein.
Length = 66
Score = 94.7 bits (225), Expect = 8e-19
Identities = 45/66 (68%), Positives = 51/66 (77%)
Frame = +1
Query: 289 RDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQYKRLNTFAYK 468
RDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH SKI FPLP RV + + F K
Sbjct: 1 RDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTK 60
Query: 469 RPSTYF 486
RP+T+F
Sbjct: 61 RPNTFF 66
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,043,767
Number of Sequences: 237096
Number of extensions: 4278456
Number of successful extensions: 10918
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10918
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 21375562260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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