Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_G01_e103_13.seq
         (1451 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   179   4e-45

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  179 bits (436), Expect = 4e-45
 Identities = 78/135 (57%), Positives = 103/135 (76%)
 Frame = +1

Query: 82  SRFWYFLRQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLS 261
           SRFWYF+  L++ KK  GEI+SIK++ EK+P  +KN+G+WL+Y+SR+G HNMYREYRD +
Sbjct: 45  SRFWYFVSMLRRVKKANGEILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTT 104

Query: 262 VGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQY 441
           V GAVTQCYRDMGARHRA+A  I I+KV+ +KA   +R  +K FH +KI FPLP RV + 
Sbjct: 105 VAGAVTQCYRDMGARHRAQADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKR 164

Query: 442 KRLNTFAYKRPSTYF 486
           K L+ F   R +T+F
Sbjct: 165 KNLSVFTTARQNTHF 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,878,768
Number of Sequences: 27780
Number of extensions: 593088
Number of successful extensions: 1222
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4152264522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)