Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_G01_e103_13.seq
         (1451 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)         155   7e-38
At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW    152   5e-37
At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC) si...   150   3e-36
At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family prote...    30   3.3  

>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
          Length = 178

 Score =  155 bits (376), Expect = 7e-38
 Identities = 68/113 (60%), Positives = 85/113 (75%)
 Frame = +1

Query: 82  SRFWYFLRQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLS 261
           S+FWYFLR+LKK KK+ G++++I EI EK+P  IKNFGIWLRY+SR+G HNMY+EYRD +
Sbjct: 41  SKFWYFLRKLKKVKKSNGQMLAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTT 100

Query: 262 VGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL 420
           + GAV Q Y +M +RHR R   IQIIK   + A  C+R   KQFH SKI FPL
Sbjct: 101 LNGAVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKRESTKQFHNSKIKFPL 153


>At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW
          Length = 178

 Score =  152 bits (369), Expect = 5e-37
 Identities = 71/137 (51%), Positives = 93/137 (67%), Gaps = 3/137 (2%)
 Frame = +1

Query: 82  SRFWYFLRQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLS 261
           S+FWY+LR+ KK KK+ G++++I EI EK+P  IKNFGIWLRY+SR+G HNMY+EYRD +
Sbjct: 41  SKFWYYLRRQKKVKKSNGQMLAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTT 100

Query: 262 VGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRV 432
           + GAV Q Y +M +RHR R   IQIIK   + A+ C+R   KQFH SKI FPL     R 
Sbjct: 101 LNGAVEQMYTEMASRHRVRFPCIQIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRP 160

Query: 433 HQYKRLNTFAYKRPSTY 483
              K   TF   +P+ +
Sbjct: 161 PTRKLKTTFKANKPNLF 177


>At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC)
           similar to GB:CAA08791 from [Podocoryne carnea]
          Length = 178

 Score =  150 bits (363), Expect = 3e-36
 Identities = 65/113 (57%), Positives = 84/113 (74%)
 Frame = +1

Query: 82  SRFWYFLRQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLS 261
           S+FWYF+R+LKK KK+ G++++I EI EK+P  IKN+GIWLRY+SR+G HNMY+EYRD +
Sbjct: 41  SKFWYFMRKLKKVKKSNGQMLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTT 100

Query: 262 VGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL 420
           + G V Q Y +M +RHR R   IQIIK   + A  C+R   KQFH SKI FPL
Sbjct: 101 LNGGVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKREITKQFHNSKIKFPL 153


>At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family protein
           contains Pfam profile: PF04615 Utp14 protein
          Length = 858

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
 Frame = +1

Query: 109 LKKFKKTTGEIVSIKEIPE-KSPVKIKNFGIWLRYESRSGVHN-MYREYRD 255
           +++F+K   E+++ +E+PE + PV +  +G W   + + G+ + M RE+ D
Sbjct: 679 VEEFEKDKQEVLN-QEVPEPEKPVLVPGWGQWTNVQKKRGLPSWMVREHED 728


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,611,736
Number of Sequences: 28952
Number of extensions: 551518
Number of successful extensions: 1093
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3845798208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)