Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_F10_e174_12.seq
         (1541 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    24   2.6  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    24   2.6  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    24   2.6  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    24   2.6  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    24   2.6  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    24   3.5  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    24   3.5  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 370 RVFFFFFSLRLISVLLNQIIIFYFLAPP 287
           R  ++FF+L +  VL++ + +  F  PP
Sbjct: 210 RTLYYFFNLIVPCVLISSMALLGFTLPP 237


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 370 RVFFFFFSLRLISVLLNQIIIFYFLAPP 287
           R  ++FF+L +  VL++ + +  F  PP
Sbjct: 210 RTLYYFFNLIVPCVLISSMALLGFTLPP 237


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 370 RVFFFFFSLRLISVLLNQIIIFYFLAPP 287
           R  ++FF+L +  VL++ + +  F  PP
Sbjct: 210 RTLYYFFNLIVPCVLISSMALLGFTLPP 237


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 370 RVFFFFFSLRLISVLLNQIIIFYFLAPP 287
           R  ++FF+L +  VL++ + +  F  PP
Sbjct: 210 RTLYYFFNLIVPCVLISSMALLGFTLPP 237


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 370 RVFFFFFSLRLISVLLNQIIIFYFLAPP 287
           R  ++FF+L +  VL++ + +  F  PP
Sbjct: 210 RTLYYFFNLIVPCVLISSMALLGFTLPP 237


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 495 PLSPAGVIAKRPAPIALPNSCA 560
           P  P GV  KR  P AL  +CA
Sbjct: 52  PCPPQGVDLKRVLPEALQTNCA 73


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 98  AHPPSSPSLNGSVP 139
           A PPS+PS +GS P
Sbjct: 413 ARPPSTPSADGSKP 426


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 263,209
Number of Sequences: 336
Number of extensions: 5089
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 46398525
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)