Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_F10_e174_12.seq
         (1541 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0615 + 5072267-5073253                                           30   4.3  
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    30   4.3  
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557...    30   4.3  
09_02_0036 + 3217163-3217584,3217752-3218322                           30   4.3  
07_03_0433 - 18169930-18170029,18171183-18171307,18172192-181723...    29   9.8  

>12_01_0615 + 5072267-5073253
          Length = 328

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 24/68 (35%), Positives = 27/68 (39%)
 Frame = +2

Query: 41  LVXXPRAAGNSARGXLRLRAHPPSSPSLNGSVPSLFLRHACAVRLM*RHVRRRNGCLRGQ 220
           L   PRAA    R   R  + PPSSPS     P L  R   AV  + R   R+ G   G 
Sbjct: 259 LAATPRAAPLPRRCATRCSSLPPSSPSRR--PPFLLSRRRGAVERIRRGKERKEGINVGT 316

Query: 221 LHLWPQLC 244
            H     C
Sbjct: 317 HHFLSFTC 324


>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 473 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 616
           L+R +   PF SW N  +A  D+ +  L  LNG    +   + LK  L
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 446


>11_06_0278 -
           21854859-21855101,21855529-21855587,21855684-21855711,
           21855812-21856702,21856792-21857011,21857638-21857687,
           21863174-21863284,21863379-21863483,21863568-21863693,
           21863796-21865187
          Length = 1074

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 473 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 616
           L+R +   PF SW N  +A  D+ +  L  LNG    +   + LK  L
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 451


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 411 ITIHWPSFYNVV-TGKTLALPNLIALQH 491
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>07_03_0433 -
           18169930-18170029,18171183-18171307,18172192-18172358,
           18173027-18173081,18173409-18173491,18173493-18173622,
           18174482-18174691
          Length = 289

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 18/48 (37%), Positives = 20/48 (41%)
 Frame = +1

Query: 127 RIGTQLIPPPCLRRATHVKARAAEERLPAGPIAPVAPTVPVGMGNHPE 270
           R+GT    PPC   +    A AA  R   GP A  A T     G  PE
Sbjct: 26  RVGTPAPQPPCRGFSKASAAAAASSR---GPAAAAATTTATAAGARPE 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,119,055
Number of Sequences: 37544
Number of extensions: 652738
Number of successful extensions: 1720
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1719
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4965702224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)