Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_F10_e174_12.seq
         (1541 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical ...    33   0.41 
U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    31   2.9  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    31   2.9  
Z80217-3|CAB02289.1|  210|Caenorhabditis elegans Hypothetical pr...    29   8.8  

>AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical
           protein Y47D3B.6 protein.
          Length = 269

 Score = 33.5 bits (73), Expect = 0.41
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 130 IGTQLIPPPCLRRATHVKARAAEERLPAGPIAPVAPTVPVGMG 258
           +G  L PP  ++  T   AR     +P  P+ PVAP +PV +G
Sbjct: 181 VGVCLCPPELIQEGTVCVARTIYGVVPP-PVIPVAPVIPVALG 222


>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 400 IGRIGYRAPPRVFFFFFSLRLISVLLNQIIIFYF 299
           IG  G+ APP VF FFF L   +  +N +I   F
Sbjct: 348 IGAFGHEAPPLVFKFFFWLGYCNSGINPVIYTVF 381


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 400 IGRIGYRAPPRVFFFFFSLRLISVLLNQIIIFYF 299
           IG  G+ APP VF FFF L   +  +N +I   F
Sbjct: 346 IGAFGHEAPPLVFKFFFWLGYCNSGINPVIYTVF 379


>Z80217-3|CAB02289.1|  210|Caenorhabditis elegans Hypothetical
           protein F37B1.3 protein.
          Length = 210

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 736 TIKERGLQRQKGEKPSIRAMAHYVXHHPN-QVFLGSR 843
           T+K+ GL    GE+P + A    V  HPN + ++ SR
Sbjct: 169 TLKKYGLLEASGEQPKLAAHLEKVYSHPNLKSYIASR 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,810,887
Number of Sequences: 27780
Number of extensions: 488529
Number of successful extensions: 1041
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4442168344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)