BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030712_F10_e174_12.seq (1541 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 24 3.0 EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 24 3.0 EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 24 3.0 EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 24 3.0 EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 24 3.0 EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 24 3.0 DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 24 3.0 DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 24 3.0 AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 5.3 >EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 6 protein. Length = 461 Score = 24.2 bits (50), Expect = 3.0 Identities = 9/28 (32%), Positives = 17/28 (60%) Frame = -2 Query: 370 RVFFFFFSLRLISVLLNQIIIFYFLAPP 287 R ++FF+L + VL++ + + F PP Sbjct: 193 RTLYYFFNLIVPCVLISSMALLGFTLPP 220 >EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 5 protein. Length = 461 Score = 24.2 bits (50), Expect = 3.0 Identities = 9/28 (32%), Positives = 17/28 (60%) Frame = -2 Query: 370 RVFFFFFSLRLISVLLNQIIIFYFLAPP 287 R ++FF+L + VL++ + + F PP Sbjct: 193 RTLYYFFNLIVPCVLISSMALLGFTLPP 220 >EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 4 protein. Length = 461 Score = 24.2 bits (50), Expect = 3.0 Identities = 9/28 (32%), Positives = 17/28 (60%) Frame = -2 Query: 370 RVFFFFFSLRLISVLLNQIIIFYFLAPP 287 R ++FF+L + VL++ + + F PP Sbjct: 193 RTLYYFFNLIVPCVLISSMALLGFTLPP 220 >EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 3 protein. Length = 461 Score = 24.2 bits (50), Expect = 3.0 Identities = 9/28 (32%), Positives = 17/28 (60%) Frame = -2 Query: 370 RVFFFFFSLRLISVLLNQIIIFYFLAPP 287 R ++FF+L + VL++ + + F PP Sbjct: 193 RTLYYFFNLIVPCVLISSMALLGFTLPP 220 >EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 2 protein. Length = 461 Score = 24.2 bits (50), Expect = 3.0 Identities = 9/28 (32%), Positives = 17/28 (60%) Frame = -2 Query: 370 RVFFFFFSLRLISVLLNQIIIFYFLAPP 287 R ++FF+L + VL++ + + F PP Sbjct: 193 RTLYYFFNLIVPCVLISSMALLGFTLPP 220 >EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 1 protein. Length = 461 Score = 24.2 bits (50), Expect = 3.0 Identities = 9/28 (32%), Positives = 17/28 (60%) Frame = -2 Query: 370 RVFFFFFSLRLISVLLNQIIIFYFLAPP 287 R ++FF+L + VL++ + + F PP Sbjct: 193 RTLYYFFNLIVPCVLISSMALLGFTLPP 220 >DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine receptor alpha6subunit protein. Length = 529 Score = 24.2 bits (50), Expect = 3.0 Identities = 9/28 (32%), Positives = 17/28 (60%) Frame = -2 Query: 370 RVFFFFFSLRLISVLLNQIIIFYFLAPP 287 R ++FF+L + VL++ + + F PP Sbjct: 261 RTLYYFFNLIVPCVLISSMALLGFTLPP 288 >DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine receptor alpha6subunit protein. Length = 529 Score = 24.2 bits (50), Expect = 3.0 Identities = 9/28 (32%), Positives = 17/28 (60%) Frame = -2 Query: 370 RVFFFFFSLRLISVLLNQIIIFYFLAPP 287 R ++FF+L + VL++ + + F PP Sbjct: 261 RTLYYFFNLIVPCVLISSMALLGFTLPP 288 >AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic acetylcholine receptoralpha7-1 protein. Length = 555 Score = 23.4 bits (48), Expect = 5.3 Identities = 9/28 (32%), Positives = 16/28 (57%) Frame = -2 Query: 370 RVFFFFFSLRLISVLLNQIIIFYFLAPP 287 R ++FF+L + VL+ + + F PP Sbjct: 230 RTLYYFFNLIVPCVLIASMAVLGFTLPP 257 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 319,939 Number of Sequences: 438 Number of extensions: 6763 Number of successful extensions: 16 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 16 length of database: 146,343 effective HSP length: 61 effective length of database: 119,625 effective search space used: 54070500 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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