Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_F09_e166_11.seq
         (1489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0912 - 24238659-24238897,24239353-24239462,24239548-242397...    30   5.4  
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513...    30   5.4  
11_01_0049 - 375049-375342,375596-375660,375907-375956,376492-37...    29   9.4  

>12_02_0912 -
           24238659-24238897,24239353-24239462,24239548-24239741,
           24239839-24239907,24240096-24240282,24240683-24240969,
           24241593-24241880
          Length = 457

 Score = 29.9 bits (64), Expect = 5.4
 Identities = 22/71 (30%), Positives = 30/71 (42%)
 Frame = -1

Query: 349 RLSAVYLCVHSYNYS*HKRCQRTSVSLRSYWRRSVRTSRWYSREDTLSYVPPPLSIALNQ 170
           R   +Y  + S+ Y     C    V + S W RS   + W   E T    PP  + AL  
Sbjct: 197 RCKILYYSIFSWLYGLVGSCAHL-VMVNSSWTRSHIENIWRIPERTRRVYPPCDTSALQM 255

Query: 169 VCLDGS*RPPI 137
           + L+ S  PPI
Sbjct: 256 LPLERSTTPPI 266


>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
            5139967-5140289,5141373-5142479,5142593-5143279,
            5144214-5144522,5145488-5145823,5146165-5146263,
            5146676-5146940,5146950-5147104,5147666-5149723,
            5150168-5150367,5150662-5150718,5150965-5151079
          Length = 1985

 Score = 29.9 bits (64), Expect = 5.4
 Identities = 20/73 (27%), Positives = 38/73 (52%)
 Frame = +1

Query: 163  DKPDLKQLKAEAARKKACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLR 342
            D+P +K  K++   K +   +C++V  EP    K  + P  F  +C     N  +K+T++
Sbjct: 1638 DEPKVKVTKSDTKEKDSL--ECSSV-IEPSSDRKLMQCPYDFEEICRKFVTNDSNKETVK 1694

Query: 343  KVGDGECAGSDGI 381
            ++G     GS+G+
Sbjct: 1695 QIG---LNGSNGV 1704


>11_01_0049 -
           375049-375342,375596-375660,375907-375956,376492-376541
          Length = 152

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 136 LLVAVSCRPDKPDLKQLKAEAARK--KACLHDCTNVK 240
           L +  SC+P + DL  L AEA+RK  K+  H C  +K
Sbjct: 88  LKIVPSCQPSRKDL--LSAEASRKGTKSIDHPCNTIK 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,516,026
Number of Sequences: 37544
Number of extensions: 445803
Number of successful extensions: 761
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4756864280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)