Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_F09_e166_11.seq
         (1489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.063
SB_135| Best HMM Match : Kazal_1 (HMM E-Value=2.9e-19)                 34   0.34 
SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)                     31   1.8  
SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)               31   2.4  
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)                      31   3.1  
SB_3798| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   3.1  
SB_11826| Best HMM Match : Kazal_1 (HMM E-Value=1.2e-16)               30   4.1  
SB_15403| Best HMM Match : CH (HMM E-Value=0)                          30   5.5  
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   5.5  
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                29   9.5  
SB_32965| Best HMM Match : Kazal_1 (HMM E-Value=3.4e-19)               29   9.5  

>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3261

 Score = 36.3 bits (80), Expect = 0.063
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +1

Query: 211  ACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGECAGSDGIRLS 390
            +C  DCTN + +PICAS      +++ + C+M    CE+   L    D  C   D + L+
Sbjct: 2153 SCPDDCTN-ETKPICASDG----QTYDNECLMQKRACENNQNLNVTSDRACPCKDPVDLA 2207


>SB_135| Best HMM Match : Kazal_1 (HMM E-Value=2.9e-19)
          Length = 92

 Score = 33.9 bits (74), Expect = 0.34
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 214 CLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGEC 363
           C   CT + + P+C    G   K++G+ CV+    CE +  ++   +GEC
Sbjct: 39  CNRACTKI-YRPVC----GTDGKTYGNKCVLEIATCESEGAVQLAHEGEC 83


>SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 293

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 20/80 (25%), Positives = 35/80 (43%)
 Frame = +1

Query: 133 VLLVAVSCRPDKPDLKQLKAEAARKKACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNN 312
           V  +AV     +  LK   A  +R   C   C N  ++P+C S N     ++ + C++ +
Sbjct: 142 VFKIAVCQMNGQLRLKHRGACGSRPDKCAPIC-NKMYQPVCGSDN----VTYSNPCMLRS 196

Query: 313 YNCEHKDTLRKVGDGECAGS 372
             C+   T+     G+C  S
Sbjct: 197 ATCKSNGTITMKHRGKCGSS 216



 Score = 29.1 bits (62), Expect = 9.5
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +1

Query: 214 CLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGECAGSDG 378
           C+  C  + + P+C    G   K++G+ C++    C    T+     GEC    G
Sbjct: 44  CVRPCPAI-YMPVC----GTDGKTYGNKCMLGAATCRSNGTITLAYPGECIVEKG 93


>SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)
          Length = 173

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +1

Query: 190 AEAARKKACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGECAG 369
           A+ +R   C   C N  ++P+C S N     ++ + C++ +  C+   T+     G+C  
Sbjct: 18  AKGSRPDKCAPIC-NKMYQPVCGSDN----VTYSNPCMLRSATCKSNGTITMKHRGKCGS 72

Query: 370 S 372
           S
Sbjct: 73  S 73


>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 2411

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 238  KFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGEC 363
            +  P+CAS      +++ + CVM    C  K+++ K  DG C
Sbjct: 893  ELRPVCASDG----RTYVNECVMRALACSRKESVNKTKDGAC 930



 Score = 30.3 bits (65), Expect = 4.1
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 244  EPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGEC 363
            +P+C S      KS+GS C +    CE K  L  V  G+C
Sbjct: 1691 QPVCGSDG----KSYGSECELRKEACEAKIKLTLVSKGKC 1726


>SB_3798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = +1

Query: 163 DKPDLKQLKAEAARKKACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLR 342
           D  D   L+++   K  C+ +C++    P      G    ++GS+C +    C+   T+ 
Sbjct: 110 DVSDRTVLRSDQYNKSHCVSNCSSCNSSPADTEVCGADGVTYGSLCRLRVATCKLGKTIG 169

Query: 343 KVGDGEC-AGSD 375
               G C  GSD
Sbjct: 170 VAYLGSCKEGSD 181


>SB_11826| Best HMM Match : Kazal_1 (HMM E-Value=1.2e-16)
          Length = 98

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +1

Query: 214 CLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGECA 366
           C   C  + + P+C    G   K++G+ C++    CE +  ++   +GEC+
Sbjct: 39  CNRACKKI-YSPMC----GTDGKTYGNKCMLEIATCESEGAVKLAHEGECS 84


>SB_15403| Best HMM Match : CH (HMM E-Value=0)
          Length = 1907

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 16/85 (18%), Positives = 36/85 (42%)
 Frame = +1

Query: 181 QLKAEAARKKACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGE 360
           Q  A+   K  C   CT  ++ P+C S       ++ ++C++    C+ +  + +   G 
Sbjct: 713 QAGADGKTKCVCSAACTR-EYAPVCGSDGN----TYNNLCLLTAARCQSQTFIYRAHFGT 767

Query: 361 CAGSDGIRLS*FXLQNLXGIFSLYI 435
           C  +    +    +  + G + LY+
Sbjct: 768 CGSTSCAEIKRSGVGRVDGDYHLYL 792


>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2101

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 226  CTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGEC 363
            CT   + P+CAS      +++ +VC M++  C+    L+ V +G C
Sbjct: 1817 CT-ADYSPVCASDG----QTYPNVCTMDSAGCQKSMNLKVVRNGTC 1857


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 29.1 bits (62), Expect = 9.5
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
 Frame = +1

Query: 214  CLHDCTNVKFEPICASKNG---EKPKS---FGSVCVMNNYNCEHKDTLRKV----GDGEC 363
            C H CT +  +P+C+   G   E P       + C  + + CE    +RK     GD +C
Sbjct: 2134 CTHTCTVLDGKPVCSCPQGYRLENPYRCVLSNASCASSEFACESGQCVRKSFVCDGDNDC 2193

Query: 364  -AGSD 375
              GSD
Sbjct: 2194 HDGSD 2198


>SB_32965| Best HMM Match : Kazal_1 (HMM E-Value=3.4e-19)
          Length = 69

 Score = 29.1 bits (62), Expect = 9.5
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +1

Query: 214 CLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGEC 363
           C+  C  +  +P+C    G   K++G+ C++    C    T+     GEC
Sbjct: 24  CVRPCPAIN-DPVC----GTDGKTYGNECMLGAATCHSNGTITLAYPGEC 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,030,771
Number of Sequences: 59808
Number of extensions: 391706
Number of successful extensions: 850
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4812488570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)