Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_F09_e166_11.seq
         (1489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    35   0.13 
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    31   1.6  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    31   1.6  
U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical pr...    30   4.8  
U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical pr...    30   4.8  

>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 35.1 bits (77), Expect = 0.13
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 175 LKQLKAEAARKKACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCE 324
           L +L       K C H+CTN +F+P+C   NG     + ++CV     CE
Sbjct: 102 LTKLHMGRCSSKDCNHNCTNTEFDPVC-DTNG---SVYRNLCVFQMRRCE 147



 Score = 29.1 bits (62), Expect = 8.5
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 172 DLKQLKAEAARKKACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKD 333
           D+    A  ARK  C+    + K  PIC ++N   P    ++C    YNCE ++
Sbjct: 294 DIAHSGACRARKSTCITCPKDEKKIPICDNRNMTHP----TLCSFIQYNCEARN 343


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +1

Query: 184 LKAEAARKKACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGEC 363
           +K +   +  C + C +V   P+CA+ NGE   +F + C M   +CE K  ++    G C
Sbjct: 383 VKPDRTAECECPNRCEDV-MRPVCAT-NGE---TFDNECEMKKKSCETKSMIKVKHQGTC 437


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +1

Query: 184 LKAEAARKKACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGEC 363
           +K +   +  C + C +V   P+CA+ NGE   +F + C M   +CE K  ++    G C
Sbjct: 391 VKPDRTAECECPNRCEDV-MRPVCAT-NGE---TFDNECEMKKKSCETKSMIKVKHQGTC 445


>U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical
           protein T13C2.6a protein.
          Length = 909

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 223 DCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRK--VGDGECAGSDG 378
           DCTN K E  C SK         S C  NN+ C + + + K  V DGE   SDG
Sbjct: 149 DCTNGKDEQNCTSKT--------SKCPDNNFQCSNGNCIFKNWVCDGEEDCSDG 194


>U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical
           protein T13C2.6b protein.
          Length = 911

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 223 DCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRK--VGDGECAGSDG 378
           DCTN K E  C SK         S C  NN+ C + + + K  V DGE   SDG
Sbjct: 151 DCTNGKDEQNCTSKT--------SKCPDNNFQCSNGNCIFKNWVCDGEEDCSDG 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,960,354
Number of Sequences: 27780
Number of extensions: 317533
Number of successful extensions: 628
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4277144658
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)