Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_F08_e158_12.seq
         (1524 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    27   0.28 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   1.1  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    25   2.0  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    25   2.0  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   6.0  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   6.0  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   6.0  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   6.0  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   6.0  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   6.0  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   6.0  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    23   7.9  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   7.9  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 0.28
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = +3

Query: 549 RRGETPRH*PSVNPMHLALPSTPPSHTRYERRVRGPLSHTVVRDRRPPIHSNGRRPSAHA 728
           +RG+        + ++L+ P TPPS         GPL  +V   +R    S  + P+   
Sbjct: 210 KRGQKSDADSDSDVVNLSKPGTPPSG----EPGNGPLDLSVSSRKRSNDDSVSQPPNRKP 265

Query: 729 QTDAAPRFTSNGPAP 773
           +TD  P+     P+P
Sbjct: 266 RTDFKPQVLPQWPSP 280


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
 Frame = +2

Query: 575  TVSESDAFSSPLNSP---LTHTLRTTRARPLVTYRGSRPPPPN 694
            T   S  +SS   SP    T T RTT  RP  T   +RP   N
Sbjct: 1036 TTKPSTWWSSTTTSPWWTTTTTRRTTTTRPTTTSTTTRPTTTN 1078


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 492 RRRTEVHTGDRPLG 533
           RR   VHTG+RP G
Sbjct: 54  RRHLRVHTGERPYG 67


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 492 RRRTEVHTGDRPLG 533
           RR   VHTG+RP G
Sbjct: 207 RRHLRVHTGERPYG 220


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 403 ISVSCSPPMYPGTDACIQN 347
           +SVS SPP  P T    QN
Sbjct: 147 LSVSTSPPGKPATSTASQN 165


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 403 ISVSCSPPMYPGTDACIQN 347
           +SVS SPP  P T    QN
Sbjct: 147 LSVSTSPPGKPATSTASQN 165


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 403 ISVSCSPPMYPGTDACIQN 347
           +SVS SPP  P T    QN
Sbjct: 147 LSVSTSPPGKPATSTASQN 165


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 403 ISVSCSPPMYPGTDACIQN 347
           +SVS SPP  P T    QN
Sbjct: 147 LSVSTSPPGKPATSTASQN 165


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 403 ISVSCSPPMYPGTDACIQN 347
           +SVS SPP  P T    QN
Sbjct: 103 LSVSTSPPGKPATSTASQN 121


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 403 ISVSCSPPMYPGTDACIQN 347
           +SVS SPP  P T    QN
Sbjct: 147 LSVSTSPPGKPATSTASQN 165


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 403 ISVSCSPPMYPGTDACIQN 347
           +SVS SPP  P T    QN
Sbjct: 147 LSVSTSPPGKPATSTASQN 165


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +3

Query: 651 GPLSHTVVRDRRPPIHSNGRRPSAHAQTDAAPRFTSNGPAPPSS 782
           G  S  +  +  PP      R   + + DAA    S+ P PP++
Sbjct: 122 GKPSGVISTNTSPPSPILSNRFGENEEADAASNVISSTPLPPTT 165


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 403 ISVSCSPPMYPGTDACIQN 347
           +SVS SPP  P T    QN
Sbjct: 147 LSVSTSPPGKPATSTTSQN 165


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 257,861
Number of Sequences: 336
Number of extensions: 5615
Number of successful extensions: 21
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 45783975
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)