Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_F08_e158_12.seq
(1524 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein. 107 2e-23
AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated... 107 2e-23
L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein. 80 4e-15
AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated... 80 4e-15
AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated... 78 2e-14
Z71180-3|CAA94892.2| 763|Caenorhabditis elegans Hypothetical pr... 31 1.6
AL021474-7|CAA16311.2| 763|Caenorhabditis elegans Hypothetical ... 31 1.6
Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical pr... 30 5.0
Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical pr... 30 5.0
Z81583-2|CAB04670.1| 314|Caenorhabditis elegans Hypothetical pr... 29 6.6
AC024801-11|AAN84814.2| 138|Caenorhabditis elegans Hypothetical... 29 8.7
>L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein.
Length = 152
Score = 107 bits (257), Expect = 2e-23
Identities = 58/152 (38%), Positives = 91/152 (59%), Gaps = 5/152 (3%)
Frame = +1
Query: 139 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGGRNAEYDSFLEDLQK- 312
MASGV V +CK Y+ + +H Y++F I +++ I VE VG +NA Y F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 313 -GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKS 489
ECRY D E T Q QG S K+ + +CPD A V+++MLY+SS ALK S
Sbjct: 61 VEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKAS 120
Query: 490 LVGVQK--YIQATDLSEASQEAVEEKLRATDR 579
L G++ +QA+++S+ +++V+ L + R
Sbjct: 121 L-GLESLFQVQASEMSDLDEKSVKSDLMSNQR 151
>AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated
protein 60, isoform c protein.
Length = 152
Score = 107 bits (257), Expect = 2e-23
Identities = 58/152 (38%), Positives = 91/152 (59%), Gaps = 5/152 (3%)
Frame = +1
Query: 139 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGGRNAEYDSFLEDLQK- 312
MASGV V +CK Y+ + +H Y++F I +++ I VE VG +NA Y F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 313 -GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKS 489
ECRY D E T Q QG S K+ + +CPD A V+++MLY+SS ALK S
Sbjct: 61 VEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKAS 120
Query: 490 LVGVQK--YIQATDLSEASQEAVEEKLRATDR 579
L G++ +QA+++S+ +++V+ L + R
Sbjct: 121 L-GLESLFQVQASEMSDLDEKSVKSDLMSNQR 151
>L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein.
Length = 165
Score = 80.2 bits (189), Expect = 4e-15
Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 18/160 (11%)
Frame = +1
Query: 139 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETV--------------GGR 273
M+SGV V +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 274 NAEYDSFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKK 447
A +D F+ED++ +CRY +FDF++T G SK K+ + CPD A +KK
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118
Query: 448 KMLYSSSFDALKKSL-VGVQKYIQATDLSEASQEAVEEKL 564
KM+Y+SS A+K SL G Q +D SE S + + KL
Sbjct: 119 KMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKL 158
>AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated
protein 60, isoform a protein.
Length = 165
Score = 80.2 bits (189), Expect = 4e-15
Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 18/160 (11%)
Frame = +1
Query: 139 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETV--------------GGR 273
M+SGV V +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 274 NAEYDSFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKK 447
A +D F+ED++ +CRY +FDF++T G SK K+ + CPD A +KK
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118
Query: 448 KMLYSSSFDALKKSL-VGVQKYIQATDLSEASQEAVEEKL 564
KM+Y+SS A+K SL G Q +D SE S + + KL
Sbjct: 119 KMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKL 158
>AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated
protein 60, isoform b protein.
Length = 212
Score = 77.8 bits (183), Expect = 2e-14
Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 18/154 (11%)
Frame = +1
Query: 139 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETV--------------GGR 273
M+SGV V +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 274 NAEYDSFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKK 447
A +D F+ED++ +CRY +FDF++T G SK K+ + CPD A +KK
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118
Query: 448 KMLYSSSFDALKKSL-VGVQKYIQATDLSEASQE 546
KM+Y+SS A+K SL G Q +D SE S +
Sbjct: 119 KMVYASSAAAIKTSLGTGKILQFQVSDESEMSHK 152
Score = 47.6 bits (108), Expect = 2e-05
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Frame = +1
Query: 364 QCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEA 537
Q SE S K+ L++ CPD A V+++MLY+SS ALK SL G++ +QA+++S+
Sbjct: 142 QVSDESEMSHKE---LLNNCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDL 197
Query: 538 SQEAVEEKLRATDR 579
+++V+ L + R
Sbjct: 198 DEKSVKSDLMSNQR 211
>Z71180-3|CAA94892.2| 763|Caenorhabditis elegans Hypothetical
protein F22E12.1 protein.
Length = 763
Score = 31.5 bits (68), Expect = 1.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 590 DAFSSPLNSPLTHTLRTTRARPLVTYRGSRPPPP 691
D + P++ P T T P VT R +RPPPP
Sbjct: 678 DEYDVPMDFPDTEAPPLTTRPPPVTVRNTRPPPP 711
>AL021474-7|CAA16311.2| 763|Caenorhabditis elegans Hypothetical
protein F22E12.1 protein.
Length = 763
Score = 31.5 bits (68), Expect = 1.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 590 DAFSSPLNSPLTHTLRTTRARPLVTYRGSRPPPP 691
D + P++ P T T P VT R +RPPPP
Sbjct: 678 DEYDVPMDFPDTEAPPLTTRPPPVTVRNTRPPPP 711
>Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 29.9 bits (64), Expect = 5.0
Identities = 23/65 (35%), Positives = 30/65 (46%)
Frame = +3
Query: 588 PMHLALPSTPPSHTRYERRVRGPLSHTVVRDRRPPIHSNGRRPSAHAQTDAAPRFTSNGP 767
P+ S PPS R+RG +SH + PP S+G PS+ A +S GP
Sbjct: 288 PLRRGTTSGPPS------RLRGRMSHPM----GPPRRSSGAPPSS-ASNRRPVESSSRGP 336
Query: 768 APPSS 782
PP S
Sbjct: 337 PPPPS 341
>Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 29.9 bits (64), Expect = 5.0
Identities = 23/65 (35%), Positives = 30/65 (46%)
Frame = +3
Query: 588 PMHLALPSTPPSHTRYERRVRGPLSHTVVRDRRPPIHSNGRRPSAHAQTDAAPRFTSNGP 767
P+ S PPS R+RG +SH + PP S+G PS+ A +S GP
Sbjct: 288 PLRRGTTSGPPS------RLRGRMSHPM----GPPRRSSGAPPSS-ASNRRPVESSSRGP 336
Query: 768 APPSS 782
PP S
Sbjct: 337 PPPPS 341
>Z81583-2|CAB04670.1| 314|Caenorhabditis elegans Hypothetical
protein T02G6.2 protein.
Length = 314
Score = 29.5 bits (63), Expect = 6.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 575 TVSESDAFSSPLNSPLTHTLRTTRARPLVTYRGSRPPPPNTLQ 703
T + ++ S L HT+R+T P+V RP PP+ ++
Sbjct: 148 TANSANGVSLTLPRVKNHTIRSTDTVPIVRVPAGRPRPPSKIE 190
>AC024801-11|AAN84814.2| 138|Caenorhabditis elegans Hypothetical
protein Y50D7A.10 protein.
Length = 138
Score = 29.1 bits (62), Expect = 8.7
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +1
Query: 367 CQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQE 546
C+ S+ + L+ +CP+ + + +MLY+ S + + V K + D+ E E
Sbjct: 74 CKKHSDERISYPMLLIYYCPNGSSPELQMLYAGSRNFIVNE-CHVSKNTEIRDIDEIDDE 132
Query: 547 AVEEK 561
+E K
Sbjct: 133 LLESK 137
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,421,748
Number of Sequences: 27780
Number of extensions: 523917
Number of successful extensions: 1749
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1737
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4379894956
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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