Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_F07_e150_11.seq
         (1535 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0146 + 23106325-23108154                                         31   2.4  
08_01_0049 - 346200-347213                                             30   5.6  
02_05_1110 - 34182943-34182963,34183122-34183301,34184201-341845...    30   5.6  

>04_04_0146 + 23106325-23108154
          Length = 609

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +2

Query: 227 RRLHEAGVTPATCDKILYEHAIE-LCQMAAIEELFGDM-KECERRYMSAQVLLHSLVQRH 400
           RR+ EAGVTP   D   Y   I+ LC++  IE+  G   K C R      V+   L+  H
Sbjct: 299 RRMSEAGVTP---DVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAH 355

Query: 401 PMHPQHRTTLSKYRD 445
                  T L  +R+
Sbjct: 356 CKKGDAETMLELHRE 370


>08_01_0049 - 346200-347213
          Length = 337

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -2

Query: 457 FLNRVSIFG*CSAVLRVHRVPLY*RVEQHLCRHVASLALLHVA 329
           FL  V I+   +++LR HR PL+ R+       ++ L LLH+A
Sbjct: 10  FLGMVGIYREAASILRAHR-PLFARIAAAFVLPLSLLFLLHIA 51


>02_05_1110 -
           34182943-34182963,34183122-34183301,34184201-34184546,
           34184794-34184846
          Length = 199

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 347 RTPSCRRTTPRWLPSDTVLLRARI 276
           R P C R TP WLP+  V++ A +
Sbjct: 40  RLPHCHRPTPPWLPATFVVVAANL 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,707,719
Number of Sequences: 37544
Number of extensions: 268048
Number of successful extensions: 618
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4942498008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)