Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_F07_e150_11.seq
         (1535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z38016-1|CAA86114.1|  856|Caenorhabditis elegans serine/threonin...    81   2e-15
AL117207-1|CAB60406.1|  856|Caenorhabditis elegans Hypothetical ...    81   2e-15

>Z38016-1|CAA86114.1|  856|Caenorhabditis elegans serine/threonine
            kinase protein.
          Length = 856

 Score = 81.0 bits (191), Expect = 2e-15
 Identities = 44/115 (38%), Positives = 73/115 (63%), Gaps = 7/115 (6%)
 Frame = +2

Query: 152  LQPTPQVRNVVSLMNGKYKWIVNESRRLHEAGVT---PA----TCDKILYEHAIELCQMA 310
            L P+  V+ V++ +N KY   +  S+ L   G+    PA    + ++I+Y HAIELCQ A
Sbjct: 733  LHPSVAVQQVLNQLNDKYHQCLVRSQELASLGLPGQDPAMAVISAERIMYRHAIELCQAA 792

Query: 311  AIEELFGDMKECERRYMSAQVLLHSLVQRHPMHPQHRTTLSKYRDAVQKRLNCLK 475
            A++ELFG+ + C +RY +A ++LH+L ++     Q +T L++Y+ AV+KRL  L+
Sbjct: 793  ALDELFGNPQLCSQRYQTAYMMLHTLAEQVNC-DQDKTVLTRYKVAVEKRLRILE 846


>AL117207-1|CAB60406.1|  856|Caenorhabditis elegans Hypothetical
            protein Y60A3A.1 protein.
          Length = 856

 Score = 81.0 bits (191), Expect = 2e-15
 Identities = 44/115 (38%), Positives = 73/115 (63%), Gaps = 7/115 (6%)
 Frame = +2

Query: 152  LQPTPQVRNVVSLMNGKYKWIVNESRRLHEAGVT---PA----TCDKILYEHAIELCQMA 310
            L P+  V+ V++ +N KY   +  S+ L   G+    PA    + ++I+Y HAIELCQ A
Sbjct: 733  LHPSVAVQQVLNQLNDKYHQCLVRSQELASLGLPGQDPAMAVISAERIMYRHAIELCQAA 792

Query: 311  AIEELFGDMKECERRYMSAQVLLHSLVQRHPMHPQHRTTLSKYRDAVQKRLNCLK 475
            A++ELFG+ + C +RY +A ++LH+L ++     Q +T L++Y+ AV+KRL  L+
Sbjct: 793  ALDELFGNPQLCSQRYQTAYMMLHTLAEQVNC-DQDKTVLTRYKVAVEKRLRILE 846


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,497,001
Number of Sequences: 27780
Number of extensions: 247259
Number of successful extensions: 548
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4421410548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)