Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_F07_e150_11.seq
         (1535 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi...    29   6.2  
At5g22355.1 68418.m02608 DC1 domain-containing protein contains ...    29   8.2  

>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
           protein contains similarity to 67kD chloroplastic
           RNA-binding protein, P67.1 [Raphanus sativus]
           GI:9755886; contains Pfam profile PF01535: PPR repeat
          Length = 711

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
 Frame = +2

Query: 161 TPQVRNVVSLMN--GKYKWIVNESRRLHEAGVTPATCDKILYEHAIELCQMAAIEE---- 322
           TP  + + +L+   GK +W  +  +   E        D ILY   + +C    +EE    
Sbjct: 358 TPNEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEAER 417

Query: 323 LFGDMKE 343
           LF DMKE
Sbjct: 418 LFNDMKE 424


>At5g22355.1 68418.m02608 DC1 domain-containing protein contains
           Pfam PF03107: DC1 domain; similar to ULI3 [Arabidopsis
           thaliana] GI:17225050
          Length = 664

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
 Frame = +2

Query: 341 ECERRYMSAQVLLHSLVQRHPMHPQHRTTLSKYR----DAVQKRLNCLKGXRKIMDVKLE 508
           ECE  +    V L   V  HP HPQH   L +Y     DA +  L C +   K++     
Sbjct: 160 ECEVHFHVECVNLSQEVN-HPSHPQHSLKLLEYESLTSDAEETCLLCGERPDKVLYRCSI 218

Query: 509 AGIS*CQITTNNP 547
              S C+  T +P
Sbjct: 219 CNFSVCRFCTKDP 231


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,102,736
Number of Sequences: 28952
Number of extensions: 215693
Number of successful extensions: 467
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4115678784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)