Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_F04_e126_12.seq
         (1448 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.   254   9e-70
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    83   7e-18

>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score =  254 bits (623), Expect = 9e-70
 Identities = 117/122 (95%), Positives = 119/122 (97%)
 Frame = +3

Query: 141 VHKRDKDAIYGHPLFPLLALIFEKCELATCTPRDPGVAGGDVCSSESFNEDIXVFSKQIR 320
           V KRDKDAIYGHPLFPLLALIFEKCELATCTPR+PGVAGGDVCSSESFNEDI VFSKQIR
Sbjct: 72  VGKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQIR 131

Query: 321 QEKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLVIDE 500
           QEKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKG MPIDLVIDE
Sbjct: 132 QEKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDE 191

Query: 501 RE 506
           R+
Sbjct: 192 RD 193


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 82.6 bits (195), Expect = 7e-18
 Identities = 35/37 (94%), Positives = 36/37 (97%)
 Frame = +3

Query: 396 HLLELEKVHELCDNFCHRYISCLKGXMPIDLVIDERE 506
           HLLELEKVHELCDNFCHRYISCLKG MPIDLVIDER+
Sbjct: 1   HLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDERD 37


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,941
Number of Sequences: 336
Number of extensions: 1954
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 43223350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)