Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_F04_e126_12.seq
         (1448 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0646 - 26385447-26385463,26385546-26385657,26385838-263859...    31   3.0  

>03_05_0646 -
           26385447-26385463,26385546-26385657,26385838-26385957,
           26386120-26386371
          Length = 166

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
 Frame = +3

Query: 144 HKRDKDAI----YGHPLFPLLALIFEKCELATCTPRDPGVAGGDVCSSESFNEDIXVFSK 311
           H+R+ DAI      HPL+P L   F  C+     P   G         +S  ED  +  +
Sbjct: 55  HERETDAIKAKIMSHPLYPALLRAFIDCQKVGAPPEVVGRLSALAGELDSRAEDRYLQGQ 114

Query: 312 QIRQEKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNF 440
                     +DPE+D  M   I +L  +  EL +  +  D F
Sbjct: 115 S---------SDPELDEFMETYIDMLVSYRQELTRPIQEADQF 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,085,119
Number of Sequences: 37544
Number of extensions: 244177
Number of successful extensions: 645
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4606036876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)