Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_F04_e126_12.seq
         (1448 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.)             186   4e-47
SB_26157| Best HMM Match : No HMM Matches (HMM E-Value=.)             114   1e-25

>SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 810

 Score =  186 bits (453), Expect = 4e-47
 Identities = 88/123 (71%), Positives = 98/123 (79%)
 Frame = +3

Query: 141 VHKRDKDAIYGHPLFPLLALIFEKCELATCTPRDPGVAGGDVCSSESFNEDIXVFSKQIR 320
           +HKRDK+ +YGHPLFPLLALIFEKCELATCTPR+PG  GGDVCSS SFNEDI  F+KQ  
Sbjct: 66  IHKRDKEVLYGHPLFPLLALIFEKCELATCTPREPGAVGGDVCSSASFNEDIQAFAKQ-- 123

Query: 321 QEKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLVIDE 500
                          M+QAIQVLRFHLLELEKVHELCDNFC RYI+CLKG MPIDLV+DE
Sbjct: 124 ---------------MIQAIQVLRFHLLELEKVHELCDNFCKRYITCLKGKMPIDLVMDE 168

Query: 501 RES 509
           +E+
Sbjct: 169 KEN 171


>SB_26157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1097

 Score =  114 bits (275), Expect = 1e-25
 Identities = 59/111 (53%), Positives = 77/111 (69%), Gaps = 1/111 (0%)
 Frame = +3

Query: 147 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDPGVAGGDVCSSESFNEDIXVFSKQIRQE 326
           + +K AIY HPLFPLLA++ EKCE AT T         D  +S++F+ DI  F  Q  +E
Sbjct: 668 ENEKVAIYRHPLFPLLAMLLEKCEHATQT--------SDCPTSDAFDNDIKNFMMQHNRE 719

Query: 327 -KPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXM 476
            KP +  D E+D+L+++AIQV R HLLELEKV+ELC +FC RYI+CLKG M
Sbjct: 720 GKPCFSGDQELDNLIIKAIQVFRIHLLELEKVNELCKDFCQRYIACLKGKM 770


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,771,390
Number of Sequences: 59808
Number of extensions: 258972
Number of successful extensions: 646
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4659897469
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)