BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030712_F04_e126_12.seq (1448 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF427477-1|AAL65145.1| 527|Caenorhabditis elegans UNC-62 splice... 171 8e-43 AF427476-1|AAL65144.1| 523|Caenorhabditis elegans UNC-62 splice... 171 8e-43 AF427475-1|AAL65143.1| 564|Caenorhabditis elegans UNC-62 splice... 171 8e-43 AF427474-1|AAL65142.1| 560|Caenorhabditis elegans UNC-62 splice... 171 8e-43 AC006692-5|AAV58860.1| 490|Caenorhabditis elegans Uncoordinated... 171 8e-43 AC006692-4|AAF39975.1| 527|Caenorhabditis elegans Uncoordinated... 171 8e-43 AC006692-3|AAO61420.1| 523|Caenorhabditis elegans Uncoordinated... 171 8e-43 AC006692-2|AAF39974.1| 564|Caenorhabditis elegans Uncoordinated... 171 8e-43 AC006692-1|AAO61421.1| 560|Caenorhabditis elegans Uncoordinated... 171 8e-43 Z69791-6|CAL36514.1| 241|Caenorhabditis elegans Hypothetical pr... 48 2e-05 Z69791-5|CAL36513.1| 281|Caenorhabditis elegans Hypothetical pr... 48 2e-05 DQ118141-1|AAZ23152.1| 241|Caenorhabditis elegans hox cofactor ... 48 2e-05 >AF427477-1|AAL65145.1| 527|Caenorhabditis elegans UNC-62 splice variant 1b-7b protein. Length = 527 Score = 171 bits (417), Expect = 8e-43 Identities = 77/126 (61%), Positives = 99/126 (78%), Gaps = 5/126 (3%) Frame = +3 Query: 147 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDP---GVAGGDVCSSESFNEDIXVFSKQI 317 KRDK++IY HPL+PLL L+FEKCELAT TPRD G DVCSS SF +D+ F + Sbjct: 57 KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 116 Query: 318 RQ--EKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLV 491 ++ +K YY+ +P++D +M+Q+IQ+LRFHLLELEKVHELCDNFC+RY+ CLKG MP+D+V Sbjct: 117 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 176 Query: 492 IDERES 509 DER S Sbjct: 177 GDERAS 182 >AF427476-1|AAL65144.1| 523|Caenorhabditis elegans UNC-62 splice variant 1b-7a protein. Length = 523 Score = 171 bits (417), Expect = 8e-43 Identities = 77/126 (61%), Positives = 99/126 (78%), Gaps = 5/126 (3%) Frame = +3 Query: 147 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDP---GVAGGDVCSSESFNEDIXVFSKQI 317 KRDK++IY HPL+PLL L+FEKCELAT TPRD G DVCSS SF +D+ F + Sbjct: 57 KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 116 Query: 318 RQ--EKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLV 491 ++ +K YY+ +P++D +M+Q+IQ+LRFHLLELEKVHELCDNFC+RY+ CLKG MP+D+V Sbjct: 117 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 176 Query: 492 IDERES 509 DER S Sbjct: 177 GDERAS 182 >AF427475-1|AAL65143.1| 564|Caenorhabditis elegans UNC-62 splice variant 1a-7b protein. Length = 564 Score = 171 bits (417), Expect = 8e-43 Identities = 77/126 (61%), Positives = 99/126 (78%), Gaps = 5/126 (3%) Frame = +3 Query: 147 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDP---GVAGGDVCSSESFNEDIXVFSKQI 317 KRDK++IY HPL+PLL L+FEKCELAT TPRD G DVCSS SF +D+ F + Sbjct: 94 KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 153 Query: 318 RQ--EKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLV 491 ++ +K YY+ +P++D +M+Q+IQ+LRFHLLELEKVHELCDNFC+RY+ CLKG MP+D+V Sbjct: 154 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 213 Query: 492 IDERES 509 DER S Sbjct: 214 GDERAS 219 >AF427474-1|AAL65142.1| 560|Caenorhabditis elegans UNC-62 splice variant 1a-7a protein. Length = 560 Score = 171 bits (417), Expect = 8e-43 Identities = 77/126 (61%), Positives = 99/126 (78%), Gaps = 5/126 (3%) Frame = +3 Query: 147 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDP---GVAGGDVCSSESFNEDIXVFSKQI 317 KRDK++IY HPL+PLL L+FEKCELAT TPRD G DVCSS SF +D+ F + Sbjct: 94 KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 153 Query: 318 RQ--EKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLV 491 ++ +K YY+ +P++D +M+Q+IQ+LRFHLLELEKVHELCDNFC+RY+ CLKG MP+D+V Sbjct: 154 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 213 Query: 492 IDERES 509 DER S Sbjct: 214 GDERAS 219 >AC006692-5|AAV58860.1| 490|Caenorhabditis elegans Uncoordinated protein 62, isoform g protein. Length = 490 Score = 171 bits (417), Expect = 8e-43 Identities = 77/126 (61%), Positives = 99/126 (78%), Gaps = 5/126 (3%) Frame = +3 Query: 147 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDP---GVAGGDVCSSESFNEDIXVFSKQI 317 KRDK++IY HPL+PLL L+FEKCELAT TPRD G DVCSS SF +D+ F + Sbjct: 20 KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 79 Query: 318 RQ--EKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLV 491 ++ +K YY+ +P++D +M+Q+IQ+LRFHLLELEKVHELCDNFC+RY+ CLKG MP+D+V Sbjct: 80 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 139 Query: 492 IDERES 509 DER S Sbjct: 140 GDERAS 145 >AC006692-4|AAF39975.1| 527|Caenorhabditis elegans Uncoordinated protein 62, isoform b protein. Length = 527 Score = 171 bits (417), Expect = 8e-43 Identities = 77/126 (61%), Positives = 99/126 (78%), Gaps = 5/126 (3%) Frame = +3 Query: 147 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDP---GVAGGDVCSSESFNEDIXVFSKQI 317 KRDK++IY HPL+PLL L+FEKCELAT TPRD G DVCSS SF +D+ F + Sbjct: 57 KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 116 Query: 318 RQ--EKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLV 491 ++ +K YY+ +P++D +M+Q+IQ+LRFHLLELEKVHELCDNFC+RY+ CLKG MP+D+V Sbjct: 117 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 176 Query: 492 IDERES 509 DER S Sbjct: 177 GDERAS 182 >AC006692-3|AAO61420.1| 523|Caenorhabditis elegans Uncoordinated protein 62, isoform e protein. Length = 523 Score = 171 bits (417), Expect = 8e-43 Identities = 77/126 (61%), Positives = 99/126 (78%), Gaps = 5/126 (3%) Frame = +3 Query: 147 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDP---GVAGGDVCSSESFNEDIXVFSKQI 317 KRDK++IY HPL+PLL L+FEKCELAT TPRD G DVCSS SF +D+ F + Sbjct: 57 KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 116 Query: 318 RQ--EKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLV 491 ++ +K YY+ +P++D +M+Q+IQ+LRFHLLELEKVHELCDNFC+RY+ CLKG MP+D+V Sbjct: 117 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 176 Query: 492 IDERES 509 DER S Sbjct: 177 GDERAS 182 >AC006692-2|AAF39974.1| 564|Caenorhabditis elegans Uncoordinated protein 62, isoform a protein. Length = 564 Score = 171 bits (417), Expect = 8e-43 Identities = 77/126 (61%), Positives = 99/126 (78%), Gaps = 5/126 (3%) Frame = +3 Query: 147 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDP---GVAGGDVCSSESFNEDIXVFSKQI 317 KRDK++IY HPL+PLL L+FEKCELAT TPRD G DVCSS SF +D+ F + Sbjct: 94 KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 153 Query: 318 RQ--EKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLV 491 ++ +K YY+ +P++D +M+Q+IQ+LRFHLLELEKVHELCDNFC+RY+ CLKG MP+D+V Sbjct: 154 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 213 Query: 492 IDERES 509 DER S Sbjct: 214 GDERAS 219 >AC006692-1|AAO61421.1| 560|Caenorhabditis elegans Uncoordinated protein 62, isoform f protein. Length = 560 Score = 171 bits (417), Expect = 8e-43 Identities = 77/126 (61%), Positives = 99/126 (78%), Gaps = 5/126 (3%) Frame = +3 Query: 147 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDP---GVAGGDVCSSESFNEDIXVFSKQI 317 KRDK++IY HPL+PLL L+FEKCELAT TPRD G DVCSS SF +D+ F + Sbjct: 94 KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 153 Query: 318 RQ--EKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLV 491 ++ +K YY+ +P++D +M+Q+IQ+LRFHLLELEKVHELCDNFC+RY+ CLKG MP+D+V Sbjct: 154 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 213 Query: 492 IDERES 509 DER S Sbjct: 214 GDERAS 219 >Z69791-6|CAL36514.1| 241|Caenorhabditis elegans Hypothetical protein F39D8.2b protein. Length = 241 Score = 47.6 bits (108), Expect = 2e-05 Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 1/104 (0%) Frame = +3 Query: 159 DAIYGHPLFPLLALIFEKCELATCTPRDPGVAGGDVCSSESFNEDIXVFSKQIRQEKPYY 338 + I HPL P++ L+ EKCE A T D + E+ +DI + + Q Sbjct: 25 EKIASHPLMPIVELLLEKCETAATT--------FDRKAFET--DDIKRLFQSLEQRGVQL 74 Query: 339 IAD-PEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLK 467 ++ EVD LM AI LR ++ELE+V+ L ++F +Y++ L+ Sbjct: 75 SSNRDEVDELMETAILALRTCMVELERVYSLMESFKAKYLATLR 118 >Z69791-5|CAL36513.1| 281|Caenorhabditis elegans Hypothetical protein F39D8.2a protein. Length = 281 Score = 47.6 bits (108), Expect = 2e-05 Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 1/104 (0%) Frame = +3 Query: 159 DAIYGHPLFPLLALIFEKCELATCTPRDPGVAGGDVCSSESFNEDIXVFSKQIRQEKPYY 338 + I HPL P++ L+ EKCE A T D + E+ +DI + + Q Sbjct: 65 EKIASHPLMPIVELLLEKCETAATT--------FDRKAFET--DDIKRLFQSLEQRGVQL 114 Query: 339 IAD-PEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLK 467 ++ EVD LM AI LR ++ELE+V+ L ++F +Y++ L+ Sbjct: 115 SSNRDEVDELMETAILALRTCMVELERVYSLMESFKAKYLATLR 158 >DQ118141-1|AAZ23152.1| 241|Caenorhabditis elegans hox cofactor PSA-3 splice variantbeta protein. Length = 241 Score = 47.6 bits (108), Expect = 2e-05 Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 1/104 (0%) Frame = +3 Query: 159 DAIYGHPLFPLLALIFEKCELATCTPRDPGVAGGDVCSSESFNEDIXVFSKQIRQEKPYY 338 + I HPL P++ L+ EKCE A T D + E+ +DI + + Q Sbjct: 25 EKIASHPLMPIVELLLEKCETAATT--------FDRKAFET--DDIKRLFQSLEQRGVQL 74 Query: 339 IAD-PEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLK 467 ++ EVD LM AI LR ++ELE+V+ L ++F +Y++ L+ Sbjct: 75 SSNRDEVDELMETAILALRTCMVELERVYSLMESFKAKYLATLR 118 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,062,930 Number of Sequences: 27780 Number of extensions: 185639 Number of successful extensions: 458 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 438 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 449 length of database: 12,740,198 effective HSP length: 84 effective length of database: 10,406,678 effective search space used: 4141857844 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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