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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_F04_e126_12.seq
         (1448 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF427477-1|AAL65145.1|  527|Caenorhabditis elegans UNC-62 splice...   171   8e-43
AF427476-1|AAL65144.1|  523|Caenorhabditis elegans UNC-62 splice...   171   8e-43
AF427475-1|AAL65143.1|  564|Caenorhabditis elegans UNC-62 splice...   171   8e-43
AF427474-1|AAL65142.1|  560|Caenorhabditis elegans UNC-62 splice...   171   8e-43
AC006692-5|AAV58860.1|  490|Caenorhabditis elegans Uncoordinated...   171   8e-43
AC006692-4|AAF39975.1|  527|Caenorhabditis elegans Uncoordinated...   171   8e-43
AC006692-3|AAO61420.1|  523|Caenorhabditis elegans Uncoordinated...   171   8e-43
AC006692-2|AAF39974.1|  564|Caenorhabditis elegans Uncoordinated...   171   8e-43
AC006692-1|AAO61421.1|  560|Caenorhabditis elegans Uncoordinated...   171   8e-43
Z69791-6|CAL36514.1|  241|Caenorhabditis elegans Hypothetical pr...    48   2e-05
Z69791-5|CAL36513.1|  281|Caenorhabditis elegans Hypothetical pr...    48   2e-05
DQ118141-1|AAZ23152.1|  241|Caenorhabditis elegans hox cofactor ...    48   2e-05

>AF427477-1|AAL65145.1|  527|Caenorhabditis elegans UNC-62 splice
           variant 1b-7b protein.
          Length = 527

 Score =  171 bits (417), Expect = 8e-43
 Identities = 77/126 (61%), Positives = 99/126 (78%), Gaps = 5/126 (3%)
 Frame = +3

Query: 147 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDP---GVAGGDVCSSESFNEDIXVFSKQI 317
           KRDK++IY HPL+PLL L+FEKCELAT TPRD    G    DVCSS SF +D+  F +  
Sbjct: 57  KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 116

Query: 318 RQ--EKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLV 491
           ++  +K YY+ +P++D +M+Q+IQ+LRFHLLELEKVHELCDNFC+RY+ CLKG MP+D+V
Sbjct: 117 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 176

Query: 492 IDERES 509
            DER S
Sbjct: 177 GDERAS 182


>AF427476-1|AAL65144.1|  523|Caenorhabditis elegans UNC-62 splice
           variant 1b-7a protein.
          Length = 523

 Score =  171 bits (417), Expect = 8e-43
 Identities = 77/126 (61%), Positives = 99/126 (78%), Gaps = 5/126 (3%)
 Frame = +3

Query: 147 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDP---GVAGGDVCSSESFNEDIXVFSKQI 317
           KRDK++IY HPL+PLL L+FEKCELAT TPRD    G    DVCSS SF +D+  F +  
Sbjct: 57  KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 116

Query: 318 RQ--EKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLV 491
           ++  +K YY+ +P++D +M+Q+IQ+LRFHLLELEKVHELCDNFC+RY+ CLKG MP+D+V
Sbjct: 117 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 176

Query: 492 IDERES 509
            DER S
Sbjct: 177 GDERAS 182


>AF427475-1|AAL65143.1|  564|Caenorhabditis elegans UNC-62 splice
           variant 1a-7b protein.
          Length = 564

 Score =  171 bits (417), Expect = 8e-43
 Identities = 77/126 (61%), Positives = 99/126 (78%), Gaps = 5/126 (3%)
 Frame = +3

Query: 147 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDP---GVAGGDVCSSESFNEDIXVFSKQI 317
           KRDK++IY HPL+PLL L+FEKCELAT TPRD    G    DVCSS SF +D+  F +  
Sbjct: 94  KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 153

Query: 318 RQ--EKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLV 491
           ++  +K YY+ +P++D +M+Q+IQ+LRFHLLELEKVHELCDNFC+RY+ CLKG MP+D+V
Sbjct: 154 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 213

Query: 492 IDERES 509
            DER S
Sbjct: 214 GDERAS 219


>AF427474-1|AAL65142.1|  560|Caenorhabditis elegans UNC-62 splice
           variant 1a-7a protein.
          Length = 560

 Score =  171 bits (417), Expect = 8e-43
 Identities = 77/126 (61%), Positives = 99/126 (78%), Gaps = 5/126 (3%)
 Frame = +3

Query: 147 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDP---GVAGGDVCSSESFNEDIXVFSKQI 317
           KRDK++IY HPL+PLL L+FEKCELAT TPRD    G    DVCSS SF +D+  F +  
Sbjct: 94  KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 153

Query: 318 RQ--EKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLV 491
           ++  +K YY+ +P++D +M+Q+IQ+LRFHLLELEKVHELCDNFC+RY+ CLKG MP+D+V
Sbjct: 154 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 213

Query: 492 IDERES 509
            DER S
Sbjct: 214 GDERAS 219


>AC006692-5|AAV58860.1|  490|Caenorhabditis elegans Uncoordinated
           protein 62, isoform g protein.
          Length = 490

 Score =  171 bits (417), Expect = 8e-43
 Identities = 77/126 (61%), Positives = 99/126 (78%), Gaps = 5/126 (3%)
 Frame = +3

Query: 147 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDP---GVAGGDVCSSESFNEDIXVFSKQI 317
           KRDK++IY HPL+PLL L+FEKCELAT TPRD    G    DVCSS SF +D+  F +  
Sbjct: 20  KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 79

Query: 318 RQ--EKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLV 491
           ++  +K YY+ +P++D +M+Q+IQ+LRFHLLELEKVHELCDNFC+RY+ CLKG MP+D+V
Sbjct: 80  QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 139

Query: 492 IDERES 509
            DER S
Sbjct: 140 GDERAS 145


>AC006692-4|AAF39975.1|  527|Caenorhabditis elegans Uncoordinated
           protein 62, isoform b protein.
          Length = 527

 Score =  171 bits (417), Expect = 8e-43
 Identities = 77/126 (61%), Positives = 99/126 (78%), Gaps = 5/126 (3%)
 Frame = +3

Query: 147 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDP---GVAGGDVCSSESFNEDIXVFSKQI 317
           KRDK++IY HPL+PLL L+FEKCELAT TPRD    G    DVCSS SF +D+  F +  
Sbjct: 57  KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 116

Query: 318 RQ--EKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLV 491
           ++  +K YY+ +P++D +M+Q+IQ+LRFHLLELEKVHELCDNFC+RY+ CLKG MP+D+V
Sbjct: 117 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 176

Query: 492 IDERES 509
            DER S
Sbjct: 177 GDERAS 182


>AC006692-3|AAO61420.1|  523|Caenorhabditis elegans Uncoordinated
           protein 62, isoform e protein.
          Length = 523

 Score =  171 bits (417), Expect = 8e-43
 Identities = 77/126 (61%), Positives = 99/126 (78%), Gaps = 5/126 (3%)
 Frame = +3

Query: 147 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDP---GVAGGDVCSSESFNEDIXVFSKQI 317
           KRDK++IY HPL+PLL L+FEKCELAT TPRD    G    DVCSS SF +D+  F +  
Sbjct: 57  KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 116

Query: 318 RQ--EKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLV 491
           ++  +K YY+ +P++D +M+Q+IQ+LRFHLLELEKVHELCDNFC+RY+ CLKG MP+D+V
Sbjct: 117 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 176

Query: 492 IDERES 509
            DER S
Sbjct: 177 GDERAS 182


>AC006692-2|AAF39974.1|  564|Caenorhabditis elegans Uncoordinated
           protein 62, isoform a protein.
          Length = 564

 Score =  171 bits (417), Expect = 8e-43
 Identities = 77/126 (61%), Positives = 99/126 (78%), Gaps = 5/126 (3%)
 Frame = +3

Query: 147 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDP---GVAGGDVCSSESFNEDIXVFSKQI 317
           KRDK++IY HPL+PLL L+FEKCELAT TPRD    G    DVCSS SF +D+  F +  
Sbjct: 94  KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 153

Query: 318 RQ--EKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLV 491
           ++  +K YY+ +P++D +M+Q+IQ+LRFHLLELEKVHELCDNFC+RY+ CLKG MP+D+V
Sbjct: 154 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 213

Query: 492 IDERES 509
            DER S
Sbjct: 214 GDERAS 219


>AC006692-1|AAO61421.1|  560|Caenorhabditis elegans Uncoordinated
           protein 62, isoform f protein.
          Length = 560

 Score =  171 bits (417), Expect = 8e-43
 Identities = 77/126 (61%), Positives = 99/126 (78%), Gaps = 5/126 (3%)
 Frame = +3

Query: 147 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDP---GVAGGDVCSSESFNEDIXVFSKQI 317
           KRDK++IY HPL+PLL L+FEKCELAT TPRD    G    DVCSS SF +D+  F +  
Sbjct: 94  KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 153

Query: 318 RQ--EKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLV 491
           ++  +K YY+ +P++D +M+Q+IQ+LRFHLLELEKVHELCDNFC+RY+ CLKG MP+D+V
Sbjct: 154 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 213

Query: 492 IDERES 509
            DER S
Sbjct: 214 GDERAS 219


>Z69791-6|CAL36514.1|  241|Caenorhabditis elegans Hypothetical
           protein F39D8.2b protein.
          Length = 241

 Score = 47.6 bits (108), Expect = 2e-05
 Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
 Frame = +3

Query: 159 DAIYGHPLFPLLALIFEKCELATCTPRDPGVAGGDVCSSESFNEDIXVFSKQIRQEKPYY 338
           + I  HPL P++ L+ EKCE A  T         D  + E+  +DI    + + Q     
Sbjct: 25  EKIASHPLMPIVELLLEKCETAATT--------FDRKAFET--DDIKRLFQSLEQRGVQL 74

Query: 339 IAD-PEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLK 467
            ++  EVD LM  AI  LR  ++ELE+V+ L ++F  +Y++ L+
Sbjct: 75  SSNRDEVDELMETAILALRTCMVELERVYSLMESFKAKYLATLR 118


>Z69791-5|CAL36513.1|  281|Caenorhabditis elegans Hypothetical
           protein F39D8.2a protein.
          Length = 281

 Score = 47.6 bits (108), Expect = 2e-05
 Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
 Frame = +3

Query: 159 DAIYGHPLFPLLALIFEKCELATCTPRDPGVAGGDVCSSESFNEDIXVFSKQIRQEKPYY 338
           + I  HPL P++ L+ EKCE A  T         D  + E+  +DI    + + Q     
Sbjct: 65  EKIASHPLMPIVELLLEKCETAATT--------FDRKAFET--DDIKRLFQSLEQRGVQL 114

Query: 339 IAD-PEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLK 467
            ++  EVD LM  AI  LR  ++ELE+V+ L ++F  +Y++ L+
Sbjct: 115 SSNRDEVDELMETAILALRTCMVELERVYSLMESFKAKYLATLR 158


>DQ118141-1|AAZ23152.1|  241|Caenorhabditis elegans hox cofactor
           PSA-3 splice variantbeta protein.
          Length = 241

 Score = 47.6 bits (108), Expect = 2e-05
 Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
 Frame = +3

Query: 159 DAIYGHPLFPLLALIFEKCELATCTPRDPGVAGGDVCSSESFNEDIXVFSKQIRQEKPYY 338
           + I  HPL P++ L+ EKCE A  T         D  + E+  +DI    + + Q     
Sbjct: 25  EKIASHPLMPIVELLLEKCETAATT--------FDRKAFET--DDIKRLFQSLEQRGVQL 74

Query: 339 IAD-PEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLK 467
            ++  EVD LM  AI  LR  ++ELE+V+ L ++F  +Y++ L+
Sbjct: 75  SSNRDEVDELMETAILALRTCMVELERVYSLMESFKAKYLATLR 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,062,930
Number of Sequences: 27780
Number of extensions: 185639
Number of successful extensions: 458
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4141857844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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