Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_F03_e118_11.seq
         (1546 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)        29   7.5  
SB_23389| Best HMM Match : LRR_3 (HMM E-Value=0.99)                    29   7.5  

>SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)
          Length = 1183

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 764  RLHIKNETXGKHRKAGVYTRLVHXGVKGSXXLQLTYFYRVLPNILYR 904
            RL I+  +  + +KAG    +   G+      QL  FYR L N+L +
Sbjct: 984  RLEIQEMSFRRQQKAGTENNIEGGGISSQDESQLHAFYRGLHNLLVK 1030


>SB_23389| Best HMM Match : LRR_3 (HMM E-Value=0.99)
          Length = 348

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 522 YFLYTVSILFSLIICLWVYTIFVS 593
           +FL   S++F+L I  WVYT+++S
Sbjct: 140 FFLAIASMIFTLQILSWVYTLYLS 163


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,216,620
Number of Sequences: 59808
Number of extensions: 530757
Number of successful extensions: 871
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5035506333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)