Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_F03_e118_11.seq
         (1546 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    26   0.76 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   1.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      25   1.7  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   7.1  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   7.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   9.3  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 26.2 bits (55), Expect = 0.76
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -2

Query: 537 QYKGNKNYRNNQCKSYL*YVSKYYFNYK--LYEINY 436
           +Y    NY NN   +Y  Y + Y  NYK   Y INY
Sbjct: 323 KYSNYNNYNNNY-NNYNNYNNNYNNNYKKLYYNINY 357


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 8/32 (25%), Positives = 20/32 (62%)
 Frame = -2

Query: 471 YYFNYKLYEINYKMTKCLSGDLRLDTFCVKSI 376
           YY +YK+++  Y   + +  +L++++F V  +
Sbjct: 428 YYHSYKMHQKPYNKDEIIYPNLKIESFTVDKL 459


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 8/32 (25%), Positives = 20/32 (62%)
 Frame = -2

Query: 471 YYFNYKLYEINYKMTKCLSGDLRLDTFCVKSI 376
           YY +YK+++  Y   + +  +L++++F V  +
Sbjct: 428 YYHSYKMHQKPYNKDEIIYPNLKIESFTVDKL 459


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = -2

Query: 546 RY*QYKG-NKNYRNNQCKSYL*YVSKYYFNY 457
           +Y  Y   N NY NN   +Y     K Y NY
Sbjct: 90  KYSNYNNYNNNYNNNYNNNYNNNYKKLYKNY 120


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = -2

Query: 546 RY*QYKG-NKNYRNNQCKSYL*YVSKYYFNY 457
           +Y  Y   N NY NN   +Y     K Y NY
Sbjct: 90  KYSNYNNYNNNYNNNYNNNYNNNYKKLYKNY 120


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -2

Query: 546 RY*QYKGNKNYRNNQCKSYL*YVSKYYFNY 457
           +Y  Y    NY NN   +Y      YY NY
Sbjct: 323 KYSNYNNYNNYNNNNYNNY--NKKLYYKNY 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 305,779
Number of Sequences: 438
Number of extensions: 6122
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 54190125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)