Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_F02_e110_12.seq
         (1480 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                27   0.31 
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    27   0.41 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    26   0.95 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                26   0.95 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   1.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   6.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   6.7  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 0.31
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +1

Query: 589 FIAGGGFGKVFKARHRLDGVEYAVKKVDIKSSNVNSIMNHLAEVKTIASLNHPNIV 756
           F+  GGFG V+KA ++  G + A K +  +  +     N L   K  + L H NIV
Sbjct: 72  FLGSGGFGIVYKALYK--GEQVAAKIIQTEKYS-----NMLNSEKHASFLKHSNIV 120


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 27.1 bits (57), Expect = 0.41
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 535 QPSGLDWSRYHREFEELYFIAGGGFGKVFKARHRL 639
           +P G+D +R  R F+  Y +   G+G   K RH L
Sbjct: 36  KPKGID-NRVRRRFKGQYLMPNIGYGSNKKTRHML 69


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.8 bits (54), Expect = 0.95
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 169 ALATIKNFDFGVKINSQHESVFHQSIHQIDLINGTTT 279
           +LAT K+F   +K NSQ E    + + ++D + G+TT
Sbjct: 557 SLATSKSF---IKANSQTEVSNSKKLDRLDSLRGSTT 590


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.8 bits (54), Expect = 0.95
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 484 PLSPVDTGLSDIDSS 440
           P SP D+G+SD++SS
Sbjct: 242 PASPADSGVSDVESS 256


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 484 PLSPVDTGLSDIDSSWPQILPLHMNHL 404
           P+SP++   S + SSWP ++PL +  L
Sbjct: 426 PISPLNDWYS-LASSWPALVPLALGFL 451


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +1

Query: 361 LYNTICEKLHSMNLIDDSYAMGEFEAMRSQYQRALYQLVTVATGSEIPINLSATWPILQP 540
           +Y  +  K + +  I DS +     A+R +Y     Q+   A    + I L+  W I++P
Sbjct: 594 VYGALLTKTNRIARIFDSASR---TAVRPRYISPASQVCIAAALIALQIVLTLVWMIIEP 650

Query: 541 SG 546
            G
Sbjct: 651 PG 652


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +1

Query: 361 LYNTICEKLHSMNLIDDSYAMGEFEAMRSQYQRALYQLVTVATGSEIPINLSATWPILQP 540
           +Y  +  K + +  I DS +     A+R +Y     Q+   A    + I L+  W I++P
Sbjct: 684 VYGALLTKTNRIARIFDSASR---TAVRPRYISPASQVCIAAALIALQIVLTLVWMIIEP 740

Query: 541 SG 546
            G
Sbjct: 741 PG 742


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 293,781
Number of Sequences: 438
Number of extensions: 5262
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 51558375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)