Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_F01_e102_11.seq
         (1492 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    25   1.9  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   7.7  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
 Frame = +2

Query: 173 FQKIKLMTYMLRSQ----------ILPLQRSMSSISGVVENTMRNKLQKSLNTKHLEIIN 322
           F K+K M Y++  Q          I+P Q +  +I  +  ++ R    K L +K  +++ 
Sbjct: 162 FHKLKKMKYLVEVQDEVKPRGVLNIIPKQDNFRAIVSIFPDSARKPFFKLLTSKIYKVLE 221

Query: 323 ESY 331
           E Y
Sbjct: 222 EKY 224


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 166 TSVSKDKTYDVYVKIANITSSTKHVFYI 249
           TS S D+   +   ++ I  + KH++YI
Sbjct: 456 TSASGDEACSLKDYVSRIKPNQKHIYYI 483


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 269,370
Number of Sequences: 336
Number of extensions: 5559
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 44657300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)