Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_F01_e102_11.seq
         (1492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.06c |uvi31||BolA domain UV inducedv protein Uvi31|Schiz...    66   1e-11
SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr ...    42   2e-04
SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ...    38   0.003
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    29   2.2  

>SPBC16E9.06c |uvi31||BolA domain UV inducedv protein
           Uvi31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 102

 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
 Frame = +2

Query: 281 LQKSLNTKHLEIINESYMHN-------VPKGAETHFKVIVVSDKFDGLSLIKRHRLVNDL 439
           L ++L T  + + N+SY H+       VP   ETHF++ +VS +F G+S + RHRLV  L
Sbjct: 19  LSEALKTDKITLYNDSYKHSHHIAMKGVPDTNETHFRLEIVSPEFSGMSRVARHRLVYGL 78

Query: 440 LKEELQTGVHALSIV-AKTPKQ 502
           LK+E   G+HAL I  +KTP +
Sbjct: 79  LKDEFDGGLHALQITSSKTPDE 100


>SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 80

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 25/68 (36%), Positives = 40/68 (58%)
 Frame = +2

Query: 281 LQKSLNTKHLEIINESYMHNVPKGAETHFKVIVVSDKFDGLSLIKRHRLVNDLLKEELQT 460
           +Q +L   H+EI       ++  G   +F+VI+VS  F+G S + RHRLVN  L+E ++ 
Sbjct: 11  IQNTLEPTHIEI------QDMSGGCGQNFEVIIVSPLFEGKSTLARHRLVNHKLQEVIK- 63

Query: 461 GVHALSIV 484
            +HA + V
Sbjct: 64  DIHAFTQV 71


>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 116

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 22/74 (29%), Positives = 42/74 (56%)
 Frame = +2

Query: 260 ENTMRNKLQKSLNTKHLEIINESYMHNVPKGAETHFKVIVVSDKFDGLSLIKRHRLVNDL 439
           E  +++ L + L+   L +I+      V  G  + ++V + S  F G + + +HRLVN +
Sbjct: 33  ERRIKDILTEKLSPSSLRVID------VSGGCGSMYQVAIKSKAFQGKNTLAQHRLVNSI 86

Query: 440 LKEELQTGVHALSI 481
           LKEE++  +H L++
Sbjct: 87  LKEEIR-NMHGLNL 99


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
 Frame = +2

Query: 269 MRNKLQKSLNTKHLEIINESYMHNVPKGAETHFKVIVVSDKFDGLSLIKRHRLVNDLLKE 448
           M +K    LNT+ L +I+E  +H   K  +     +  S+ FD L   +R R+ +D++ E
Sbjct: 467 MASKFLIFLNTEEL-LIHERILHE-EKNLKFALSELSNSNIFDSLVCEERERVTDDIVYE 524

Query: 449 -----ELQTGVHALSIV 484
                 L TG++A+S++
Sbjct: 525 VGETGALLTGLYAVSLL 541


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,499,980
Number of Sequences: 5004
Number of extensions: 83552
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 832513080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)