Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_F01_e102_11.seq
         (1492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0188 + 6251256-6251561                                           86   8e-17
09_02_0168 - 5253588-5254688                                           76   8e-14
01_06_1460 - 37519393-37519591,37519724-37519746,37519843-37519905     42   0.002
01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982           33   0.58 
08_02_1524 + 27657711-27657768,27658612-27658671,27658805-276588...    30   5.4  

>03_02_0188 + 6251256-6251561
          Length = 101

 Score = 85.8 bits (203), Expect = 8e-17
 Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 5/83 (6%)
 Frame = +2

Query: 269 MRNKLQKSLNTKHLEIINESYMHN----VPKGA-ETHFKVIVVSDKFDGLSLIKRHRLVN 433
           MR KLQ +L    L+I + SY H     V   A ETHF + V+S KF+G SL+KRHR+V 
Sbjct: 16  MRQKLQSALEASALDIEDVSYQHAGHAAVKDNANETHFNIRVISPKFEGQSLVKRHRMVY 75

Query: 434 DLLKEELQTGVHALSIVAKTPKQ 502
           DLL +EL +G+HA+SIVAKTPK+
Sbjct: 76  DLLTDELNSGLHAISIVAKTPKE 98


>09_02_0168 - 5253588-5254688
          Length = 366

 Score = 75.8 bits (178), Expect = 8e-14
 Identities = 40/91 (43%), Positives = 58/91 (63%), Gaps = 5/91 (5%)
 Frame = +2

Query: 245 ISGVVENTMRNKLQKSLNTKHLEIINESYMHNVPKGA-----ETHFKVIVVSDKFDGLSL 409
           + G  +  ++  L++ L+   L+I + S++H    G      ETHF V VVS+ F G SL
Sbjct: 275 LGGGRQERIKESLERGLSPVQLQIEDISHLHKGHAGVSGSNGETHFNVRVVSEAFQGKSL 334

Query: 410 IKRHRLVNDLLKEELQTGVHALSIVAKTPKQ 502
           +KRHR V DLL++EL+ G+HALSI AKTP +
Sbjct: 335 LKRHRAVYDLLQDELKNGLHALSIDAKTPSE 365


>01_06_1460 - 37519393-37519591,37519724-37519746,37519843-37519905
          Length = 94

 Score = 41.5 bits (93), Expect = 0.002
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
 Frame = +2

Query: 251 GVVENTMRNKLQKSLNTKHLEIINESYMHNVPKGAETHFKVIVVSDKFDGLSLIKRHRLV 430
           GV +  +   +  SL+   L + + S       G    +++ VVS+KF+G  L++RHR+V
Sbjct: 2   GVTKEDVEAAITSSLSPSSLVVTDTS------GGCGASYEIEVVSEKFEGKRLLERHRMV 55

Query: 431 NDLLKEELQTGVHALSI-VAKTPKQ 502
           N  L   +   +HA+SI  A TP Q
Sbjct: 56  NTALAPHM-AEIHAVSIKKALTPAQ 79


>01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982
          Length = 301

 Score = 33.1 bits (72), Expect = 0.58
 Identities = 20/67 (29%), Positives = 23/67 (34%)
 Frame = +1

Query: 1081 GGXPAXGHXGXXPXXSGXLGSXXTXRXSXPXGXXGGXPAWERXXXKGXXXXGXKXXXXPG 1260
            G  P+  H G  P   G  G+      S   G  GG PA       G    G       G
Sbjct: 98   GALPSPSHGGAAPSHGGGYGASPPVTPSPGGGYGGGSPA----PSHGGGAYGSSPSTPSG 153

Query: 1261 GGSAXXP 1281
            GGS+  P
Sbjct: 154  GGSSPTP 160


>08_02_1524 +
           27657711-27657768,27658612-27658671,27658805-27658890,
           27659343-27659963,27660460-27660618
          Length = 327

 Score = 29.9 bits (64), Expect = 5.4
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
 Frame = +2

Query: 212 QILPLQRSMSSISGVVENTMRNKLQKSLNTKHLEIIN-ESYMHNVPKGAETHFK--VIVV 382
           ++L +  +MS +   ++  +++ LQ SL      +    SY+  V K A+ HFK  V V 
Sbjct: 158 ELLDICNAMSEVFTELKAIIQD-LQVSLRKGDNAVAKIHSYIRLVKK-AKKHFKKTVKVA 215

Query: 383 SDKFDGLSLIKRHRLVNDLLKEELQTGVHALSIVAKTPK 499
           SDK D   ++KR     ++    L++ +H LS   + PK
Sbjct: 216 SDKED-CKIVKRLSKAREITTSLLESTMHLLSKQIQMPK 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,460,223
Number of Sequences: 37544
Number of extensions: 578945
Number of successful extensions: 1017
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4768466388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)