BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030712_F01_e102_11.seq (1492 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_52013| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 1e-05 SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002) 31 2.4 SB_5476| Best HMM Match : Caerin_1 (HMM E-Value=2.1) 31 2.4 SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.1 SB_10128| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.6 SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.6 >SB_52013| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 64 Score = 48.8 bits (111), Expect = 1e-05 Identities = 21/52 (40%), Positives = 34/52 (65%) Frame = +2 Query: 350 GAETHFKVIVVSDKFDGLSLIKRHRLVNDLLKEELQTGVHALSIVAKTPKQW 505 G + ++VS+KF G L++RH++V L+EE++T +HA S TP+QW Sbjct: 8 GCGAKIEAVIVSEKFQGKPLLQRHKMVYGCLEEEMKT-IHAFSQKTYTPEQW 58 >SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002) Length = 1725 Score = 31.1 bits (67), Expect = 2.4 Identities = 24/77 (31%), Positives = 38/77 (49%) Frame = +2 Query: 245 ISGVVENTMRNKLQKSLNTKHLEIINESYMHNVPKGAETHFKVIVVSDKFDGLSLIKRHR 424 I+GV+E T +L NT L I+++ + K F + S + DGLSL+ Sbjct: 1501 INGVLELT--TELLSGTNT--LIILDDCAVSRDLKRRSNKFIDLAFSGRHDGLSLLSEMS 1556 Query: 425 LVNDLLKEELQTGVHAL 475 V D +KEE + V ++ Sbjct: 1557 SVEDYMKEEPEVEVSSI 1573 >SB_5476| Best HMM Match : Caerin_1 (HMM E-Value=2.1) Length = 225 Score = 31.1 bits (67), Expect = 2.4 Identities = 24/77 (31%), Positives = 38/77 (49%) Frame = +2 Query: 245 ISGVVENTMRNKLQKSLNTKHLEIINESYMHNVPKGAETHFKVIVVSDKFDGLSLIKRHR 424 I+GV+E T +L NT L I+++ + K F + S + DGLSL+ Sbjct: 62 INGVLELT--TELLSGTNT--LIILDDCAVSRDLKRRSNKFIDLAFSGRHDGLSLLSEMS 117 Query: 425 LVNDLLKEELQTGVHAL 475 V D +KEE + V ++ Sbjct: 118 SVEDYMKEEPEVEVSSI 134 >SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3592 Score = 30.7 bits (66), Expect = 3.1 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = -3 Query: 341 HCACTIHL*FPNV*CLMISVVCFSLYSRQHQI*KTC 234 HC CT+ FP V +++SV+CF L S + C Sbjct: 927 HCQCTV---FPTVFIVIVSVLCFQLSSSSSSLSVYC 959 >SB_10128| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 330 Score = 29.1 bits (62), Expect = 9.6 Identities = 11/32 (34%), Positives = 22/32 (68%) Frame = +1 Query: 607 NLITIKFVSLYKYSHILHIKYFHNLHSMMTLK 702 +L T F++L KYS ++ +KY +N+ +++ K Sbjct: 135 SLYTFIFITLIKYSPLVRVKYRYNIAAVILAK 166 >SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1234 Score = 29.1 bits (62), Expect = 9.6 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Frame = +3 Query: 306 IWKL*M-NRTCTMCQKGRKPISKLLLCQISLMGYHL 410 +W L N C +C++ + LLLC MGYHL Sbjct: 889 VWDLSAENVKCKVCRRKSRSDETLLLCDECNMGYHL 924 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 34,213,617 Number of Sequences: 59808 Number of extensions: 640871 Number of successful extensions: 1230 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 1130 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1229 length of database: 16,821,457 effective HSP length: 85 effective length of database: 11,737,777 effective search space used: 4824226347 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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