Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_F01_e102_11.seq
         (1492 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52013| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   1e-05
SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002)             31   2.4  
SB_5476| Best HMM Match : Caerin_1 (HMM E-Value=2.1)                   31   2.4  
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.1  
SB_10128| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.6  
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.6  

>SB_52013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 48.8 bits (111), Expect = 1e-05
 Identities = 21/52 (40%), Positives = 34/52 (65%)
 Frame = +2

Query: 350 GAETHFKVIVVSDKFDGLSLIKRHRLVNDLLKEELQTGVHALSIVAKTPKQW 505
           G     + ++VS+KF G  L++RH++V   L+EE++T +HA S    TP+QW
Sbjct: 8   GCGAKIEAVIVSEKFQGKPLLQRHKMVYGCLEEEMKT-IHAFSQKTYTPEQW 58


>SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002)
          Length = 1725

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 24/77 (31%), Positives = 38/77 (49%)
 Frame = +2

Query: 245  ISGVVENTMRNKLQKSLNTKHLEIINESYMHNVPKGAETHFKVIVVSDKFDGLSLIKRHR 424
            I+GV+E T   +L    NT  L I+++  +    K     F  +  S + DGLSL+    
Sbjct: 1501 INGVLELT--TELLSGTNT--LIILDDCAVSRDLKRRSNKFIDLAFSGRHDGLSLLSEMS 1556

Query: 425  LVNDLLKEELQTGVHAL 475
             V D +KEE +  V ++
Sbjct: 1557 SVEDYMKEEPEVEVSSI 1573


>SB_5476| Best HMM Match : Caerin_1 (HMM E-Value=2.1)
          Length = 225

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 24/77 (31%), Positives = 38/77 (49%)
 Frame = +2

Query: 245 ISGVVENTMRNKLQKSLNTKHLEIINESYMHNVPKGAETHFKVIVVSDKFDGLSLIKRHR 424
           I+GV+E T   +L    NT  L I+++  +    K     F  +  S + DGLSL+    
Sbjct: 62  INGVLELT--TELLSGTNT--LIILDDCAVSRDLKRRSNKFIDLAFSGRHDGLSLLSEMS 117

Query: 425 LVNDLLKEELQTGVHAL 475
            V D +KEE +  V ++
Sbjct: 118 SVEDYMKEEPEVEVSSI 134


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 341  HCACTIHL*FPNV*CLMISVVCFSLYSRQHQI*KTC 234
            HC CT+   FP V  +++SV+CF L S    +   C
Sbjct: 927  HCQCTV---FPTVFIVIVSVLCFQLSSSSSSLSVYC 959


>SB_10128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +1

Query: 607 NLITIKFVSLYKYSHILHIKYFHNLHSMMTLK 702
           +L T  F++L KYS ++ +KY +N+ +++  K
Sbjct: 135 SLYTFIFITLIKYSPLVRVKYRYNIAAVILAK 166


>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 306 IWKL*M-NRTCTMCQKGRKPISKLLLCQISLMGYHL 410
           +W L   N  C +C++  +    LLLC    MGYHL
Sbjct: 889 VWDLSAENVKCKVCRRKSRSDETLLLCDECNMGYHL 924


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,213,617
Number of Sequences: 59808
Number of extensions: 640871
Number of successful extensions: 1230
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4824226347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)