Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_F01_e102_11.seq
         (1492 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-2|AAC24398.1|  108|Caenorhabditis elegans Hypothetical pr...   111   2e-24
Z81120-6|CAH10814.1|   98|Caenorhabditis elegans Hypothetical pr...    42   0.001

>U88168-2|AAC24398.1|  108|Caenorhabditis elegans Hypothetical
           protein K11H12.1 protein.
          Length = 108

 Score =  111 bits (266), Expect = 2e-24
 Identities = 57/109 (52%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
 Frame = +2

Query: 236 MSSIS-GVVENTMRNKLQKSLNTKHLEIINESYMHNVPKGAETHFKVIVVSDKFDGLSLI 412
           MS++S G V   ++ KL  +   KHLE+  ES++HNVPKGAE HF+V VVSD+F+G  +I
Sbjct: 1   MSTLSEGPVARLLKEKLFAAFQPKHLEVECESHLHNVPKGAEKHFRVQVVSDEFEGKRVI 60

Query: 413 KRHRLVNDLLKEELQTGVHALSIVAKTPKQWEESDKVVESSPNCRGGFG 559
           +RHRLVN  L +EL T VHAL I A    +W+   +  E SP CRGGFG
Sbjct: 61  ERHRLVNTCLAKELATTVHALRIDAIPTSKWDGQKQ--EDSPTCRGGFG 107


>Z81120-6|CAH10814.1|   98|Caenorhabditis elegans Hypothetical
           protein T12D8.10 protein.
          Length = 98

 Score = 41.9 bits (94), Expect = 0.001
 Identities = 19/61 (31%), Positives = 34/61 (55%)
 Frame = +2

Query: 365 FKVIVVSDKFDGLSLIKRHRLVNDLLKEELQTGVHALSIVAKTPKQWEESDKVVESSPNC 544
           F++++VS+ F+G   ++ HRLV   L   +    HAL+I A TP++W +       +  C
Sbjct: 35  FRLLIVSEAFEGKCTLQSHRLVQAAL-APIMDETHALTICAYTPERWSQMTTEDRQNAGC 93

Query: 545 R 547
           +
Sbjct: 94  Q 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,650,210
Number of Sequences: 27780
Number of extensions: 510533
Number of successful extensions: 950
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4287551336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)