Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_F01_e102_11.seq
         (1492 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55805.1 68414.m06392 BolA-like family protein contains Pfam ...    88   1e-17
At4g26500.1 68417.m03813 BolA-like family protein / Fe-S metabol...    83   6e-16
At5g09830.1 68418.m01137 BolA-like family protein contains Pfam ...    59   6e-09
At5g17560.1 68418.m02060 BolA-like family protein contains Pfam ...    43   5e-04
At2g33760.1 68415.m04140 pentatricopeptide (PPR) repeat-containi...    33   0.64 
At4g15400.1 68417.m02354 transferase family protein similar to d...    29   5.9  

>At1g55805.1 68414.m06392 BolA-like family protein contains Pfam
           profile: PF01722 BolA-like protein
          Length = 160

 Score = 88.2 bits (209), Expect = 1e-17
 Identities = 53/113 (46%), Positives = 65/113 (57%), Gaps = 9/113 (7%)
 Frame = +2

Query: 206 RSQILPLQRSMSSISGVVENT---MRNKLQKSLNTKHLEIINESYMHNVPKGA------E 358
           RS  +       S SG +EN    MR KLQK L    L I + SY H    G       E
Sbjct: 48  RSVAMSSVEKTGSDSGAIENRASRMREKLQKELEPVELVIEDVSYQHAGHAGMKGRTDDE 107

Query: 359 THFKVIVVSDKFDGLSLIKRHRLVNDLLKEELQTGVHALSIVAKTPKQWEESD 517
           THF V +VS  F+G++L+KRHRLV  LL+EEL TG+HALSIV+KTP +    D
Sbjct: 108 THFNVKIVSKGFEGMNLVKRHRLVYHLLREELDTGLHALSIVSKTPSESPSKD 160


>At4g26500.1 68417.m03813 BolA-like family protein / Fe-S metabolism
           associated domain-containing protein similar to SufE
           protein [Erwinia chrysanthemi] GI:11342550; contains
           Pfam profiles PF02657: Fe-S metabolism associated
           domain, PF01722: BolA-like protein
          Length = 371

 Score = 82.6 bits (195), Expect = 6e-16
 Identities = 42/86 (48%), Positives = 58/86 (67%), Gaps = 8/86 (9%)
 Frame = +2

Query: 269 MRNKLQKSLNTKHLEIINESYMH--------NVPKGAETHFKVIVVSDKFDGLSLIKRHR 424
           +R KL+K L+   LE+ + SY H        +     ETHF + +VSD F G SL+KRHR
Sbjct: 285 IREKLEKELDPVELEVEDVSYQHAGHAAVRGSAGDDGETHFNLRIVSDAFQGKSLVKRHR 344

Query: 425 LVNDLLKEELQTGVHALSIVAKTPKQ 502
           L+ DLL++EL++G+HALSIVAKTP +
Sbjct: 345 LIYDLLQDELKSGLHALSIVAKTPAE 370


>At5g09830.1 68418.m01137 BolA-like family protein contains Pfam
           profile: PF01722 BolA-like protein
          Length = 93

 Score = 59.3 bits (137), Expect = 6e-09
 Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
 Frame = +2

Query: 254 VVENTMRNKLQKSLNTKHLEIINESYMHNVPKGAETHFKVIVVSDKFDGLSLIKRHRLVN 433
           V +  +   L   L   HLE+I+      +  G  + F+V VVS++F+G  L++RHR+VN
Sbjct: 2   VTKEQVEASLTSKLKPIHLEVID------ISGGCGSSFEVEVVSEQFEGKRLLERHRMVN 55

Query: 434 DLLKEELQTGVHALSI-VAKTPKQWE 508
             L+EE++  +HALSI  A+TP+QW+
Sbjct: 56  AALEEEMKE-IHALSIKKAQTPQQWK 80


>At5g17560.1 68418.m02060 BolA-like family protein contains Pfam
           profile: PF01722 BolA-like protein
          Length = 177

 Score = 43.2 bits (97), Expect = 5e-04
 Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
 Frame = +2

Query: 203 LRSQILPLQRSMSSISGVVENTMRNKLQKSLNTKHLEIIN-ESYMHNVPKGAETHFKVIV 379
           +RS     + S  + +G ++ T    L +S+  K  E +N ES       G   H  + V
Sbjct: 79  IRSLNFSTKSSQINDAGSIDQT----LMQSMELKIKEQLNAESVTVTDMSGDGRHVCINV 134

Query: 380 VSDKFDGLSLIKRHRLVNDLLKEELQTGVHAL-SIVAKTPKQ 502
           VS  F+G S + R R+V   + EELQ  VHA+  +  KTP +
Sbjct: 135 VSSAFEGQSAVNRQRMVYKAIWEELQNVVHAVDQMTTKTPSE 176


>At2g33760.1 68415.m04140 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 583

 Score = 32.7 bits (71), Expect = 0.64
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = +2

Query: 197 YMLRSQILPLQRSMSSISGVVENTMRNKLQKSLNTKHLEIINESYMHNVPKGAETH 364
           +++ S I  L      +S + +  MRN L+K +    +E+ N++YM ++  G E+H
Sbjct: 418 HVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSM--GDESH 471


>At4g15400.1 68417.m02354 transferase family protein similar to
           deacetylvindoline 4-O-acetyltransferase [Catharanthus
           roseus][GI:4091808][PMID:9681034], benzylalcohol
           acetyltransferase [Clarkia
           breweri][GI:6166336][PMID:10588064]
          Length = 435

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
 Frame = +2

Query: 338 NVPKGAETHFKVIVVSDKFDGLSLIKRHRLVNDLLKEELQ---TGVHALSIVAKTPKQWE 508
           ++ K AE+ F++  +   F      K    VN+++KE LQ    G   LS++A+T  +  
Sbjct: 296 SLKKDAESEFEIPEIVATFR-----KNKERVNEMIKESLQGNTIGQSLLSLMAETVSEST 350

Query: 509 ESDKVVESSPNCRGGF 556
           E D+ + SS  CR  F
Sbjct: 351 EIDRYIMSS-WCRKPF 365


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,110,015
Number of Sequences: 28952
Number of extensions: 453307
Number of successful extensions: 782
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3971099904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)