Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_E10_e173_10.seq
         (1489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    28   2.9  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    28   3.8  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    28   3.8  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    27   5.0  
SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   8.8  
SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity fac...    27   8.8  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    27   8.8  

>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +1

Query: 568 TELHLVTRHSVSCP-TASVPKTAL*YPVTCQQKTYPR*LPSLLMMPSTITTSNFTKRSSM 744
           T LH   + S S   T SVP +   Y  +    T      SL   P+TI +S+F   S  
Sbjct: 492 TTLHSSVQSSQSSQFTVSVPSSTQSYSTSSNFTTPITISTSLSSFPTTIVSSSFQYSSLS 551

Query: 745 ENVKIPXVVTSKLRS 789
            NV      +S L S
Sbjct: 552 SNVTTTNAQSSSLSS 566


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 202 NKSYARTRTLANGSGWWLARATTVATSSNVPPRVFKLSVVPLVCSSTL 345
           N SY  T T +N S  +    T  AT ++ PP     SV+P    S++
Sbjct: 370 NSSYTTTLTASNTSITYTGTGTGSATFTSSPPFYSNSSVIPTSVPSSV 417



 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 202 NKSYARTRTLANGSGWWLARATTVATSSNVPPRVFKLSVVPLVCSSTL 345
           N SY  T T +N +  +    T  AT ++ PP     SV+P    S++
Sbjct: 424 NSSYTTTLTASNTTVTFTGTGTGSATFTSSPPFYSNSSVIPTSAPSSV 471


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 348 KQTCDWKEAVKNCKLKNKERKVKPLLYTEEPLCQ-DGFL 461
           +Q    K  +KN K+KN   ++KPLL TE   CQ D FL
Sbjct: 149 EQLIQIKVCMKNEKMKNLMEQLKPLLQTE---CQFDKFL 184


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 529 PSAQSFSPLQKRPRSIQVESPQARNP 452
           P + S SPLQK  +  Q+ESP A  P
Sbjct: 250 PISPSISPLQKVNKQQQIESPTATFP 275


>SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 303 IQAIRCPAGLFFDIEKQTCDWKEAVKN 383
           ++A+RCP  L+   + QT  WK+  K+
Sbjct: 32  VRALRCPIWLWPTYDAQTIPWKKKKKS 58


>SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 103 LLWPRVSCSPALLLMGTDGGDKLRKQ*RKTRVWNKSYARTRTLA 234
           LLW  + CSP + L+G+ G  K      KT V+ +++  +R LA
Sbjct: 189 LLW--LPCSPTVTLLGSRGFSKR----SKTSVFREAFTDSRVLA 226


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
            1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 628  SSEQKQSGRTHCDASQ-GGARLGSLSISQEFSSEPSAQSFSPLQ 500
            S ++  S   + +AS+  GAR    S +   S+ PSA++  PLQ
Sbjct: 947  SQQESSSNEENENASRTSGARFSFSSKASRLSARPSARTVPPLQ 990


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,799,621
Number of Sequences: 5004
Number of extensions: 92061
Number of successful extensions: 295
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 830530906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)