Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_E10_e173_10.seq
         (1489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0579 + 18949742-18949909,18951483-18951563,18951762-18952103     32   1.0  
04_04_1633 + 34928139-34928511,34928700-34928774,34929385-349294...    30   4.1  
06_03_0345 + 19758188-19758382,19759857-19759952,19760061-197601...    30   5.4  
05_07_0350 - 29457444-29457871,29458786-29461456                       30   5.4  
07_01_0779 + 6020009-6020174,6022307-6022428,6022853-6022962,602...    29   9.4  

>08_02_0579 + 18949742-18949909,18951483-18951563,18951762-18952103
          Length = 196

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +3

Query: 465 CGDSTCIERGLFC--NGEKDCADGSDENSCDIDND 563
           CGD+ C   G+FC  NG+ D A  S+++S D+ +D
Sbjct: 157 CGDTGCFADGIFCPGNGDSDPA-ASNDSSVDMHSD 190


>04_04_1633 +
           34928139-34928511,34928700-34928774,34929385-34929483,
           34929736-34929908,34929990-34930066,34930182-34930301,
           34930385-34930472,34930610-34930716,34930814-34930871
          Length = 389

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 671 GYVFCWQVTGYHSAVFGTEAVGQDT 597
           GY  CW  +G+H  V GT    Q T
Sbjct: 266 GYSICWNKSGFHEVVLGTTGRKQGT 290


>06_03_0345 +
           19758188-19758382,19759857-19759952,19760061-19760144,
           19760504-19760573,19760934-19761838,19763661-19764287
          Length = 658

 Score = 29.9 bits (64), Expect = 5.4
 Identities = 19/74 (25%), Positives = 32/74 (43%)
 Frame = +3

Query: 345 EKQTCDWKEAVKNCKLKNKERKVKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCA 524
           EK+     E V+  + + +ER+    L   E    +G ++C  ST         G+K+  
Sbjct: 426 EKERRGESERVET-ERRGEERRGVDKLRCHEEFVTEGHISCSVSTDDSDSSTSKGDKNAK 484

Query: 525 DGSDENSCDIDNDP 566
           DG D+   D   +P
Sbjct: 485 DGKDKGDKDKSEEP 498


>05_07_0350 - 29457444-29457871,29458786-29461456
          Length = 1032

 Score = 29.9 bits (64), Expect = 5.4
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = -1

Query: 682 VIIWGTSFAGKSPGITVPSSEQKQSGRTHCDASQGGARLGSLSISQEFSSEPSAQSFSPL 503
           +++ GT   G +PG T P S     G          A LG L+ S  F++   A + S +
Sbjct: 628 LVLCGTPAPGPAPGTTTPGS----GGDGRAPVMWLAAALGLLACSVAFAAAAVATTRSAI 683

Query: 502 QKRPRS 485
           ++R RS
Sbjct: 684 ERRRRS 689


>07_01_0779 +
           6020009-6020174,6022307-6022428,6022853-6022962,
           6024342-6024395,6026977-6027096,6027790-6029347
          Length = 709

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = -3

Query: 839 PVCLLYGRVIGVLMRYKERSFDVTTXGIFTFSIEDLFVKFDVVIVD 702
           PVC+L   VI V  R KERS       IFT   E   V  +V+I +
Sbjct: 61  PVCVLKDEVINV-HRQKERSIVQERLRIFTAECESKQVHTEVIIAE 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,873,415
Number of Sequences: 37544
Number of extensions: 721310
Number of successful extensions: 2100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2100
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4756864280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)