Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_E10_e173_10.seq
(1489 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08) 143 3e-34
SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.) 112 6e-25
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 108 1e-23
SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20) 54 4e-07
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 52 9e-07
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 52 9e-07
SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34) 52 1e-06
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 52 2e-06
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 48 2e-05
SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38) 46 6e-05
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 46 8e-05
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 1e-04
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 1e-04
SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07) 44 2e-04
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 44 3e-04
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 44 3e-04
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 3e-04
SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44) 44 3e-04
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 3e-04
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 43 7e-04
SB_21487| Best HMM Match : MAM (HMM E-Value=0) 42 0.001
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 42 0.001
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.004
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.004
SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.005
SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.005
SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23) 39 0.009
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.016
SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45) 38 0.021
SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.021
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.027
SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16) 38 0.027
SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.027
SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27) 38 0.027
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 37 0.036
SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22) 37 0.036
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 37 0.048
SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16) 36 0.063
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.063
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 36 0.083
SB_2014| Best HMM Match : MAM (HMM E-Value=0) 35 0.15
SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.19
SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064) 35 0.19
SB_58073| Best HMM Match : CBM_14 (HMM E-Value=1.4e-17) 34 0.34
SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11) 34 0.34
SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.34
SB_2355| Best HMM Match : Carn_acyltransf (HMM E-Value=0) 33 0.44
SB_1784| Best HMM Match : CBM_14 (HMM E-Value=7e-18) 33 0.59
SB_664| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.59
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29) 33 0.77
SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15) 33 0.77
SB_52148| Best HMM Match : EGF (HMM E-Value=0) 32 1.0
SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.0
SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.4
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 32 1.4
SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.4
SB_52147| Best HMM Match : EGF (HMM E-Value=0) 31 2.4
SB_41873| Best HMM Match : Homeobox (HMM E-Value=2.3e-29) 31 3.1
SB_33807| Best HMM Match : RNA_pol (HMM E-Value=2.7e-10) 30 5.5
SB_45190| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.5
SB_41869| Best HMM Match : Laminin_EGF (HMM E-Value=9.7e-23) 30 5.5
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0) 30 5.5
SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19) 30 5.5
SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.2
SB_17635| Best HMM Match : CUB (HMM E-Value=0) 29 9.5
SB_47133| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.5
SB_8216| Best HMM Match : Metallothio_2 (HMM E-Value=0.71) 29 9.5
>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
Length = 893
Score = 143 bits (347), Expect = 3e-34
Identities = 67/129 (51%), Positives = 84/129 (65%)
Frame = +3
Query: 573 APPCDASQCVLPDCFCSEDGTVIPGDLPAKDVPQMITITFDDAINNNNIELYKEIFNGKR 752
A C C LP+CFCS G ++PG L K++PQMI +TFDDAIN +Y++IFNGK
Sbjct: 566 AERCHPDVCKLPNCFCS--GALVPGGLNPKEIPQMIMLTFDDAINGQVYPVYQKIFNGK- 622
Query: 753 KNPXGCDIKATFFISHKYTNYSAVQETHRXGHEIAVHSITHNDEERFWSNPTVXDWGXEM 932
KNP GCDI+ATFF+SH+YT Y +Q + HEIA HSI+H +W N TV W E
Sbjct: 623 KNPNGCDIRATFFVSHEYTQYQLLQALYHERHEIADHSISHRLPIPWWKNATVKQWTDEA 682
Query: 933 AGMXVIIXK 959
AGM I+ K
Sbjct: 683 AGMREILRK 691
>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 112 bits (270), Expect = 6e-25
Identities = 54/118 (45%), Positives = 67/118 (56%)
Frame = +3
Query: 567 NRAPPCDASQCVLPDCFCSEDGTVIPGDLPAKDVPQMITITFDDAINNNNIELYKEIFNG 746
N A CD +C P+C CS+D PG L PQ+I ITFDD I N E YK+ G
Sbjct: 25 NVAEKCDLEKCQPPNCRCSDDFQP-PGGLSPALTPQIIMITFDDDITVINYEQYKDAVKG 83
Query: 747 KRKNPXGCDIKATFFISHKYTNYSAVQETHRXGHEIAVHSITHNDEERFWSNPTVXDW 920
NP GC I ATFFISH YTNY ++ H GHE+A H++TH +W + T +W
Sbjct: 84 FT-NPNGCPITATFFISHNYTNYYLAEKLHSEGHELADHTVTHRTPTTYWEDATYEEW 140
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 108 bits (260), Expect = 1e-23
Identities = 48/110 (43%), Positives = 66/110 (60%)
Frame = +3
Query: 624 EDGTVIPGDLPAKDVPQMITITFDDAINNNNIELYKEIFNGKRKNPXGCDIKATFFISHK 803
E G +P L K +PQMI +TFDDAIN Y+ + N KNP GC+++ATFF+SH+
Sbjct: 1551 ECGASVPNGLDPKQIPQMIMLTFDDAINMQVFPFYQTLLNDT-KNPNGCNVRATFFVSHE 1609
Query: 804 YTNYSAVQETHRXGHEIAVHSITHNDEERFWSNPTVXDWGXEMAGMXVII 953
YT+Y + + HEIA H+I+H +W T DWG E+ GM I+
Sbjct: 1610 YTDYQLLGTLYHERHEIADHTISHRTPIEWWKKATYQDWGSEIRGMRDIL 1659
>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
Length = 772
Score = 53.6 bits (123), Expect = 4e-07
Identities = 23/83 (27%), Positives = 38/83 (45%)
Frame = +3
Query: 372 AVKNCKLKNKERKVKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCD 551
A+ N + + +KP C G C + CI + L+C+G+ C DGSDE C+
Sbjct: 67 AIANVSITTRSCAIKPTFSFPGHSCGSGEFQCDNGKCIRKNLYCDGDFACVDGSDETRCE 126
Query: 552 IDNDPNRAPPCDASQCVLPDCFC 620
P+ C + +C++ C
Sbjct: 127 C---PSNMFLCPSGECIMGTQLC 146
Score = 37.5 bits (83), Expect = 0.027
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
C C CI C+G+KDC D +DE +C
Sbjct: 127 CPSNMFLCPSGECIMGTQLCDGKKDCTDNTDEKNC 161
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 52.4 bits (120), Expect = 9e-07
Identities = 24/60 (40%), Positives = 28/60 (46%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPCDASQCVLPDCFCS 623
C+ C D C+ FCNGE DC DGSDE SC DN + C CV C+
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESDCTDGSDEWSC--DNSCSSRHACADGTCVTWSLTCN 131
Score = 46.4 bits (105), Expect = 6e-05
Identities = 20/40 (50%), Positives = 22/40 (55%)
Frame = +3
Query: 462 ACGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAPP 581
AC D TC+ L CNG DC DGSDE +D R PP
Sbjct: 117 ACADGTCVTWSLTCNGVSDCQDGSDEPKLCGKHDTMRPPP 156
Score = 39.9 bits (89), Expect = 0.005
Identities = 22/91 (24%), Positives = 38/91 (41%)
Frame = +3
Query: 375 VKNCKLKNKERKVKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDI 554
V +L + ++PL C C + C+ + + C+G+ C D SDE +C
Sbjct: 15 VSRIRLTTESCHMQPLHAHPSHSCHGDQFQCLNGMCVGQEVRCDGDYACVDHSDERNCAC 74
Query: 555 DNDPNRAPPCDASQCVLPDCFCSEDGTVIPG 647
+ + C +CV P FC+ + G
Sbjct: 75 RSAEFK---CPDGKCVHPSKFCNGESDCTDG 102
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 52.4 bits (120), Expect = 9e-07
Identities = 24/60 (40%), Positives = 28/60 (46%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPCDASQCVLPDCFCS 623
C+ C D C+ FCNGE DC DGSDE SC DN + C CV C+
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESDCTDGSDEWSC--DNSCSSRHACADGTCVTWSLTCN 131
Score = 41.9 bits (94), Expect = 0.001
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = +3
Query: 462 ACGDSTCIERGLFCNGEKDCADGSDE 539
AC D TC+ L CNG DC DGSDE
Sbjct: 117 ACADGTCVTWSLTCNGVSDCQDGSDE 142
Score = 41.1 bits (92), Expect = 0.002
Identities = 23/91 (25%), Positives = 38/91 (41%)
Frame = +3
Query: 375 VKNCKLKNKERKVKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDI 554
V +L + ++PL C C + C+ + L C+G+ C D SDE +C
Sbjct: 15 VSRIRLTTESCHMQPLHAHPSHSCHGDQFQCLNGMCVGQELRCDGDYACVDHSDERNCAC 74
Query: 555 DNDPNRAPPCDASQCVLPDCFCSEDGTVIPG 647
+ + C +CV P FC+ + G
Sbjct: 75 RSAEFK---CPDGKCVHPSKFCNGESDCTDG 102
>SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)
Length = 262
Score = 52.0 bits (119), Expect = 1e-06
Identities = 25/82 (30%), Positives = 33/82 (40%)
Frame = +3
Query: 384 CKLKNKERKVKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDND 563
C+ +N E V T C G CG+ CI C+ + DC D SDEN+C
Sbjct: 168 CRCQNGEVLVNGQCKTLSGTCAPGQFKCGNGKCIPSSWKCDHDNDCGDNSDENNCPYSTC 227
Query: 564 PNRAPPCDASQCVLPDCFCSED 629
CD +C+ C D
Sbjct: 228 NPSQFKCDNGRCISSKWRCDHD 249
Score = 32.3 bits (70), Expect = 1.0
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
C C + CI C+ + DC D SDE +C
Sbjct: 227 CNPSQFKCDNGRCISSKWRCDHDNDCGDMSDERNC 261
>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 622
Score = 51.6 bits (118), Expect = 2e-06
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPCDASQCVLPDCFCS 623
C + C + C++RGL C+G+K C DGSDE C P+ C + +C+ C+
Sbjct: 183 CLEDEFGCENGQCVKRGLLCDGDKACLDGSDEKHCSC---PSNMFLCPSGECIPTTALCN 239
Query: 624 ED 629
+
Sbjct: 240 NE 241
Score = 39.5 bits (88), Expect = 0.007
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDN 560
C C CI CN E DC+D +DE +C N
Sbjct: 219 CPSNMFLCPSGECIPTTALCNNENDCSDNADERNCQYAN 257
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 48.0 bits (109), Expect = 2e-05
Identities = 22/66 (33%), Positives = 26/66 (39%)
Frame = +3
Query: 432 EEPLCQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPCDASQCVLPD 611
E C C TCI R C+ + DC DGSDE C PN C + C+
Sbjct: 2453 ERATCDVTQFRCKTGTCITREWRCDHQDDCGDGSDEQQCVNYTCPNHTFKCTSGHCIANS 2512
Query: 612 CFCSED 629
C D
Sbjct: 2513 SVCDGD 2518
Score = 46.4 bits (105), Expect = 6e-05
Identities = 24/69 (34%), Positives = 29/69 (42%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPCDASQCVLPDCFCS 623
C+ G +C + CI C+ E DC D SDE C P C +CV D C
Sbjct: 2209 CEPGHFSCNNGRCINAKWVCDRENDCGDNSDEARCPEVTCPAHEFTCPNGRCVSYDFLC- 2267
Query: 624 EDGTVIPGD 650
DG GD
Sbjct: 2268 -DGEDDCGD 2275
Score = 46.0 bits (104), Expect = 8e-05
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPCDASQCVLPDCFCS 623
C C + C+ R C+G DC DGSDE +C + C + +C+ D C
Sbjct: 3007 CAPYHFRCDNFRCVYRSRVCDGIDDCRDGSDERNCHVTTCTADQFRCPSGRCISRDWLCD 3066
Query: 624 ED 629
D
Sbjct: 3067 GD 3068
Score = 46.0 bits (104), Expect = 8e-05
Identities = 23/61 (37%), Positives = 26/61 (42%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPCDASQCVLPDCFCS 623
C DG +C D CI R C+G DCAD SDE P R C CV C
Sbjct: 3207 CADGQFSCDDGLCIARAWKCDGMMDCADASDEKGSGHRWCPQRLYQCINHVCVDRRWLCD 3266
Query: 624 E 626
+
Sbjct: 3267 D 3267
Score = 44.0 bits (99), Expect = 3e-04
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 444 CQDGFLACGDST-CIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPC-DASQCVLPDCF 617
C+ AC + CI+R C+GE DC D SDE C +++ N C + S+C+
Sbjct: 1087 CKPFEFACANGRHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNTSRCIAKSQV 1146
Query: 618 CSEDGTV 638
C DG V
Sbjct: 1147 C--DGRV 1151
Score = 43.6 bits (98), Expect = 4e-04
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDI 554
C + C CI C+G+ DCADGSDE CD+
Sbjct: 2496 CPNHTFKCTSGHCIANSSVCDGDTDCADGSDEKDCDL 2532
Score = 43.6 bits (98), Expect = 4e-04
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 5/126 (3%)
Frame = +3
Query: 258 EGDN-CRDVIQCTASGIQAIRCPAGLFFDIEKQTC---DWK-EAVKNCKLKNKERKVKPL 422
+GDN C D A G + CPAG + C +W+ + +C+ + E +
Sbjct: 3066 DGDNDCGDSSDEKA-GECHVTCPAGQARCATGRRCIPSEWRCDGESDCEDGSDENSAQCT 3124
Query: 423 LYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPCDASQCV 602
T + F D CI C+GE DC DGSDE C C + +C+
Sbjct: 3125 AIT---CSAETFRCYSDRRCIPNQWKCDGESDCNDGSDEKGCPPKQCAKHQYRCASGRCI 3181
Query: 603 LPDCFC 620
C
Sbjct: 3182 SASWVC 3187
Score = 42.7 bits (96), Expect = 7e-04
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 465 CGDSTCIERGLFCNGEKDCADGSDENSCDIDN-DPNRAPPCDASQCVLPDCFCSEDGTVI 641
C + CI + C+G KDCADGSDE++C P+ S+C+ C DGT
Sbjct: 95 CANGRCINKKWRCDGMKDCADGSDESTCGEGTCRPDEWHCIGTSRCIPLSRVC--DGTND 152
Query: 642 PGD 650
GD
Sbjct: 153 CGD 155
Score = 40.7 bits (91), Expect = 0.003
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENS 545
C AC C+ + C+G+ DC DGSDE+S
Sbjct: 2168 CASSEFACESGQCVRKSFVCDGDNDCHDGSDESS 2201
Score = 40.7 bits (91), Expect = 0.003
Identities = 32/120 (26%), Positives = 42/120 (35%), Gaps = 4/120 (3%)
Frame = +3
Query: 255 GEGDNCRDVIQCTASGIQAIRCPAGLFFDIEKQTC---DWK-EAVKNCKLKNKERKVKPL 422
GE D C D ++ AI C A F + C WK + +C + E+ P
Sbjct: 3108 GESD-CEDGSDENSAQCTAITCSAETFRCYSDRRCIPNQWKCDGESDCNDGSDEKGCPP- 3165
Query: 423 LYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPCDASQCV 602
C C CI C+ DC DGSDE C + CD C+
Sbjct: 3166 -----KQCAKHQYRCASGRCISASWVCDHVNDCGDGSDEQQCINRTCADGQFSCDDGLCI 3220
Score = 39.1 bits (87), Expect = 0.009
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDE-NSCDI 554
C + C + CI R C+GE DC DGSDE +SC +
Sbjct: 2926 CTNNDFMCDNYRCISRLWRCDGEDDCGDGSDEPDSCPV 2963
Score = 38.3 bits (85), Expect = 0.016
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENS 545
C AC + CI L C+G+ DC D SDE +
Sbjct: 2370 CTGAQFACDNGRCISTRLLCDGDNDCGDNSDETT 2403
Score = 37.9 bits (84), Expect = 0.021
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
C C + C R C+G DC DGSDE C
Sbjct: 910 CSASMFRCANGQCKPRDWVCDGFDDCGDGSDEKGC 944
Score = 37.5 bits (83), Expect = 0.027
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDE-NSCDID-NDPNRAPPCDASQCV 602
C C + CI + C+GE DC D SDE ++C DP C +C+
Sbjct: 47 CPPTKFLCANGMCIPKSAVCDGENDCGDMSDEPSNCSAHICDPKLEFQCANGRCI 101
Score = 37.1 bits (82), Expect = 0.036
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 438 PLCQDGFLACGDSTCIERGLFCNGEKDCADGSDEN 542
P C G C + CI C+GE DC D SDE+
Sbjct: 823 PPCSAGKFTCKNGHCISLRWKCDGENDCVDNSDED 857
Score = 37.1 bits (82), Expect = 0.036
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +3
Query: 444 CQDGFLAC-GDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPCDASQ--CVLPDC 614
C +C S C+ C+GE DC DGSDE+ + + RA CD +Q C C
Sbjct: 2414 CTQSEYSCRSTSRCVPLAFVCDGENDCGDGSDESE---EQNCERA-TCDVTQFRCKTGTC 2469
Query: 615 FCSE 626
E
Sbjct: 2470 ITRE 2473
Score = 37.1 bits (82), Expect = 0.036
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENS--CDIDNDPNRAPPCDASQCVLPDCF 617
C C CI R C+G+ DC D SDE + C + +A +C+ +
Sbjct: 3046 CTADQFRCPSGRCISRDWLCDGDNDCGDSSDEKAGECHVTCPAGQARCATGRRCIPSEWR 3105
Query: 618 C 620
C
Sbjct: 3106 C 3106
Score = 35.9 bits (79), Expect = 0.083
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = +3
Query: 444 CQDGFLACGDST-CIERGLFCNGEKDCADGSDENSCDIDNDPNRAP-PCDASQCVLPDCF 617
C G + CG CI C+G DC DG DE + N + C + +CV
Sbjct: 2287 CVPGQVKCGSKNLCIPSSWLCDGSDDCGDGWDERQDCRERPCNVSEFRCTSGECVPASWR 2346
Query: 618 CSED 629
C D
Sbjct: 2347 CDGD 2350
Score = 35.5 bits (78), Expect = 0.11
Identities = 20/72 (27%), Positives = 27/72 (37%)
Frame = +3
Query: 435 EPLCQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPCDASQCVLPDC 614
E C C + C+ C+GE DC D SDE C C + +P
Sbjct: 2245 EVTCPAHEFTCPNGRCVSYDFLCDGEDDCGDFSDELRCPPTTCVPGQVKCGSKNLCIPSS 2304
Query: 615 FCSEDGTVIPGD 650
+ DG+ GD
Sbjct: 2305 WLC-DGSDDCGD 2315
Score = 35.5 bits (78), Expect = 0.11
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Frame = +3
Query: 432 EEPLCQDGFLACGDSTCIERGLFCNGEKDCADGSDE-NSCDIDNDPNRAP--PCDASQCV 602
E P C C C+ C+G+ DC D SDE C N CD +C+
Sbjct: 2325 ERP-CNVSEFRCTSGECVPASWRCDGDNDCTDKSDEPTDCQRSNATCTGAQFACDNGRCI 2383
Query: 603 LPDCFCSED 629
C D
Sbjct: 2384 STRLLCDGD 2392
Score = 34.3 bits (75), Expect = 0.25
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = +3
Query: 450 DGFLACGDSTCIERGLFCNGEKDCADGSDEN-SCDIDNDPNRAPPCDASQCV-LPD---C 614
D + S CI + C+G DC D SDE C +D + C A C+ +P+ C
Sbjct: 1130 DRWRCSNTSRCIAKSQVCDGRVDCPDASDEGPGCGLDQCHSNNGGC-AQLCMDVPEGVQC 1188
Query: 615 FCSEDGTVIPGDLPAKDVPQMI 680
C T+ + +D+ + +
Sbjct: 1189 SCRPGFTLASDNKTCEDINECL 1210
Score = 32.7 bits (71), Expect = 0.77
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 435 EPLCQ-DGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDND 563
E C+ D + G S CI C+G DC D DE S +D D
Sbjct: 124 EGTCRPDEWHCIGTSRCIPLSRVCDGTNDCGDNYDEGSHCLDLD 167
Score = 32.3 bits (70), Expect = 1.0
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Frame = +3
Query: 441 LCQDGFLACGDST-CIERGLFCNGEKDCADGSDENSCDIDNDPNRAPP----CDASQCVL 605
+C+ G C D+ CI C+G C G DE++C N+ P CD +CV
Sbjct: 2965 VCKPGTYQCADNRKCISVLEVCDGIPSCPAGDDESNC---GSVNQCAPYHFRCDNFRCVY 3021
Query: 606 PDCFC 620
C
Sbjct: 3022 RSRVC 3026
Score = 31.5 bits (68), Expect = 1.8
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENS--CDIDNDPNRAPPCDASQCV 602
C C + C++R C+ DC D SDE C N CD ++C+
Sbjct: 3246 CPQRLYQCINHVCVDRRWLCDDMDDCGDYSDELRLLCRYSICRNSHFRCDNNKCI 3300
Score = 31.1 bits (67), Expect = 2.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 441 LCQDGFLACGDSTCIERGLFCNGEKDCADGSDE 539
+C++ C ++ CI + C+G C D SDE
Sbjct: 3286 ICRNSHFRCDNNKCIPKWNVCDGVYHCTDKSDE 3318
Score = 30.3 bits (65), Expect = 4.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 474 STCIERGLFCNGEKDCADGSDENSC 548
S CI C+ + DC D SDE +C
Sbjct: 1058 SRCIPLRFVCDADDDCGDRSDERNC 1082
>SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38)
Length = 130
Score = 46.4 bits (105), Expect = 6e-05
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 348 KQTCDWKEAVKNCKLKNKERKVKPLLYTEEPLCQDGFLACGD-STCIERGLFCNGEKDCA 524
K C E KNC PL +P C+ C + S C++R C+G +DCA
Sbjct: 66 KSDCSGGEDEKNCVKPQTPPPTPPL----KPKCRISQRRCDNGSGCVDRMKICDGMRDCA 121
Query: 525 DGSDENSC 548
DGSDE C
Sbjct: 122 DGSDERGC 129
Score = 44.0 bits (99), Expect = 3e-04
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 441 LCQDGFLACGDST-CIERGLFCNGEKDCADGSDENSCDIDNDPNRAPP 581
+C+D CG S CI + C+G+ DC+ G DE +C P PP
Sbjct: 42 VCRDDQFQCGTSRKCIRKSKICDGKSDCSGGEDEKNCVKPQTPPPTPP 89
Score = 36.7 bits (81), Expect = 0.048
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
C C + CI R C+ E DC D SDE C
Sbjct: 4 CSATEFRCNNGRCITRAFRCDDEDDCLDNSDEQGC 38
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 46.0 bits (104), Expect = 8e-05
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +3
Query: 438 PLCQDGFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
P+CQ G C +CI+ G C+ DC D SDEN+C
Sbjct: 2091 PMCQYGQFRCARGSCIDTGRVCDFTDDCGDNSDENNC 2127
Score = 44.0 bits (99), Expect = 3e-04
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +3
Query: 438 PLCQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDN 560
P C G C D +CI + L C+ + DC+DG DE SC N
Sbjct: 2244 PPCPFGLFRCTDGSCIMQSLRCDYQNDCSDGLDEASCGTCN 2284
Score = 41.5 bits (93), Expect = 0.002
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 417 PLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
P T P C G C + CI C+ +KDC+DGSDE +C
Sbjct: 2541 PPTSTPPPGCNSGEHRCSNGQCINAIQVCDFKKDCSDGSDEATC 2584
Score = 35.9 bits (79), Expect = 0.083
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 453 GFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
G++ C + CI++ C+ DC D SDE C
Sbjct: 3207 GYVKCTNGGCIQKSKLCDFTDDCGDNSDEGRC 3238
Score = 32.3 bits (70), Expect = 1.0
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +3
Query: 372 AVKNCKLKNKERKVKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCA--DGSDENS 545
AV + KL+N KPL T C C CI + C+ + DC D SDE+
Sbjct: 4041 AVDDVKLEN----CKPLDVTRP--CNTDEFKCSRGGCIPKSYLCDYQADCMFNDLSDESK 4094
Query: 546 CD 551
CD
Sbjct: 4095 CD 4096
Score = 31.9 bits (69), Expect = 1.4
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +3
Query: 471 DSTCIERGLFCNGEKDCADGSDENSC 548
D CI C+ DC DGSDE SC
Sbjct: 3435 DGKCIPLTSVCDFNVDCLDGSDERSC 3460
Score = 31.9 bits (69), Expect = 1.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 459 LACGDSTCIERGLFCNGEKDCADGSDENSC 548
+A G + CI C+ K+C DGSDE +C
Sbjct: 3855 VAEGPNACILSTQVCDFSKNCKDGSDEKNC 3884
Score = 31.5 bits (68), Expect = 1.8
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENS 545
C C CI C+ E DC DGS+E +
Sbjct: 2783 CSSNQFRCDSGHCISSSSKCDFETDCCDGSEERN 2816
Score = 31.5 bits (68), Expect = 1.8
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +3
Query: 441 LCQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDND 563
+C C +C C+ DC D SDE SC N+
Sbjct: 3619 VCTRSQFRCTRGSCTSSDNVCDFSDDCGDSSDERSCSSYNN 3659
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 45.2 bits (102), Expect = 1e-04
Identities = 37/142 (26%), Positives = 52/142 (36%), Gaps = 6/142 (4%)
Frame = +3
Query: 315 RCPAGLFFDIEKQTCDWKEAVKNCKLKNKERKVKPLLYTEEPLCQDGFLACGDSTCIERG 494
RC G F + C +NC+ + E +C DG + C+ R
Sbjct: 434 RCIPGRFRCDHRSDCLDGSDEQNCQNVTRPTPPPVKCRKNERMCADG------NGCVHRR 487
Query: 495 LFCNGEKDCADGSDENSCDIDNDPNRAPPCDASQCVLPDCFCSEDGTVIPGD------LP 656
C+GE+DC DGSDE C + C +C+ C DGT GD P
Sbjct: 488 WICDGERDCLDGSDEAGCGTIGCSSDEFTCTNQKCIPLPQKC--DGTDNCGDGSDEKMCP 545
Query: 657 AKDVPQMITITFDDAINNNNIE 722
VP I + +N +
Sbjct: 546 TPSVPPQPDIAYQPVSGDNTTQ 567
Score = 41.9 bits (94), Expect = 0.001
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAP-PCDASQCVLPDCFC 620
C C +S C+ C+GE DC D SDE+ C + CD +C+ C
Sbjct: 343 CPPSDFTCANSQCVPNSFRCDGENDCGDRSDESGCKPTTTCSANEFRCDDGRCITSTFRC 402
Query: 621 SED 629
+
Sbjct: 403 DRE 405
Score = 40.3 bits (90), Expect = 0.004
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +3
Query: 465 CGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAPP----CDASQCVLPDCF 617
C + C+ + C+G DC D SDE++C P PP C SQCV P+ F
Sbjct: 308 CRNGRCVLKEWLCDGMDDCGDSSDEDNCP-TRPPYTCPPSDFTCANSQCV-PNSF 360
Score = 39.5 bits (88), Expect = 0.007
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +3
Query: 429 TEEPLCQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNR 572
T C C + CI+ C+G DC D SDE +C + P R
Sbjct: 125 TARMTCDPSQHTCNNGQCIKASWLCDGASDCQDNSDEMNCPLTLAPGR 172
Score = 34.3 bits (75), Expect = 0.25
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
C C D CI C+ E DC D SDE C
Sbjct: 383 CSANEFRCDDGRCITSTFRCDREFDCTDRSDERGC 417
Score = 31.5 bits (68), Expect = 1.8
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +3
Query: 456 FLACGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAP 578
F CI C+ DC DGSDE +C P P
Sbjct: 427 FTCAFSGRCIPGRFRCDHRSDCLDGSDEQNCQNVTRPTPPP 467
Score = 31.5 bits (68), Expect = 1.8
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +3
Query: 441 LCQDGFLACGDST-CIERGLFCNGEKDCADGSDENSCDIDN 560
+C CG ST CI C+ C G DE +C N
Sbjct: 571 VCPRDHFRCGSSTICIANSKVCDATPHCPHGEDERNCATRN 611
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 45.2 bits (102), Expect = 1e-04
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +3
Query: 372 AVKNCKLKNKERKVKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKD-CADGSDENSC 548
A+++ ++ ++ P++ C D C + C+ + CNG +D C DGSDE+ C
Sbjct: 635 AIRDIQITTEDCLCTPVIAEPGYKCLDHLFTCNNGECVTKTSRCNGMRDSCVDGSDESGC 694
Query: 549 DIDNDPNRAPPCDASQCVLPDCFCSEDGTVIPGD 650
+ C + +C+ FC DG GD
Sbjct: 695 TCGLHEFQ---CSSGECIEVATFC--DGKKDCGD 723
Score = 41.9 bits (94), Expect = 0.001
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +3
Query: 465 CGDSTCIERGLFCNGEKDCADGSDENSC 548
C CIE FC+G+KDC DG DE C
Sbjct: 703 CSSGECIEVATFCDGKKDCGDGFDETHC 730
>SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07)
Length = 106
Score = 44.4 bits (100), Expect = 2e-04
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDI 554
C C D TCI+R CNG+ DC D SDE C +
Sbjct: 4 CPGSKYECRDGTCIDRNEHCNGKIDCPDASDEKGCGL 40
>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 921
Score = 44.0 bits (99), Expect = 3e-04
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +3
Query: 450 DGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPCDASQCVLPDCFCS 623
D L C + C ++ +C+G+ DC DGSDE +C +P P +A C L + C+
Sbjct: 226 DKQLRCDNGRCEDKRWWCDGQDDCNDGSDEKNCSASANPT---PTNAQGCKLNNGGCA 280
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 44.0 bits (99), Expect = 3e-04
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
C G +C + CI R C+ + DC DGSDE +C
Sbjct: 50 CNSGQFSCSNGRCISRSWVCDRDNDCGDGSDERNC 84
Score = 37.1 bits (82), Expect = 0.036
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDNDP 566
C+ +C + C+ L C+G DC D SDE SC+ P
Sbjct: 103 CRSWEFSCLNGRCVFYRLVCDGVDDCGDSSDEMSCNATATP 143
Score = 36.7 bits (81), Expect = 0.048
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDE-NSCDIDNDPNRAPPCDASQCVLPDCFC 620
C C + CI C+G+ DC D SDE SC + + C +C+ C
Sbjct: 10 CPSNRFRCNNGRCIPMSWRCDGDNDCGDMSDEPPSCSGRSCNSGQFSCSNGRCISRSWVC 69
Query: 621 SED 629
D
Sbjct: 70 DRD 72
Score = 36.3 bits (80), Expect = 0.063
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 465 CGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAP 578
C + C+ C+G+ DC D SDE C P P
Sbjct: 156 CANRRCVYNSQRCDGQNDCGDWSDETGCSTPPIPTTCP 193
>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 44.0 bits (99), Expect = 3e-04
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPCDAS--QCVLPDC 614
C+ C D CI C+G++DCAD SDE +C PN + C +S QC +C
Sbjct: 551 CRPNEFTCADKRCILSRWRCDGDRDCADNSDEINC-----PNSSQYCKSSEYQCSTGEC 604
Score = 32.7 bits (71), Expect = 0.77
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENS 545
C+ C CI + C+GE DC + SDE +
Sbjct: 592 CKSSEYQCSTGECIHKSWVCDGEFDCLNKSDETT 625
>SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44)
Length = 212
Score = 44.0 bits (99), Expect = 3e-04
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 444 CQDGFLACGDST-CIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPC-DASQCVLPDCF 617
C+ AC + CI+R C+GE DC D SDE C +++ N C + S+C+
Sbjct: 114 CKPFEFACANGRHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNTSRCIAKSQV 173
Query: 618 CSEDGTV 638
C DG V
Sbjct: 174 C--DGRV 178
Score = 31.9 bits (69), Expect = 1.4
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 450 DGFLACGDSTCIERGLFCNGEKDCADGSDEN-SCDID 557
D + S CI + C+G DC D SDE C +D
Sbjct: 157 DRWRCSNTSRCIAKSQVCDGRVDCPDASDEGPGCGLD 193
Score = 30.3 bits (65), Expect = 4.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 474 STCIERGLFCNGEKDCADGSDENSC 548
S CI C+ + DC D SDE +C
Sbjct: 85 SRCIPLRFVCDADDDCGDRSDERNC 109
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 44.0 bits (99), Expect = 3e-04
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPCDAS--QCVLPDC 614
C+ C D CI C+G++DCAD SDE +C PN + C +S QC +C
Sbjct: 706 CRPNEFTCADKRCILSRWRCDGDRDCADNSDEINC-----PNSSQYCKSSEYQCSTGEC 759
Score = 42.3 bits (95), Expect = 0.001
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPCDASQCVLPDCFCS 623
C + + CG+ C+ + C+ + DC DG+DE +C C +C+L C
Sbjct: 667 CSENEITCGNGICVVKRWVCDQDDDCGDGTDELNCAPHTCRPNEFTCADKRCILSRWRCD 726
Query: 624 ED 629
D
Sbjct: 727 GD 728
Score = 40.3 bits (90), Expect = 0.004
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +3
Query: 429 TEEP-LCQDGFLACGDST-CIERGLFCNGEKDCADGSDE-NSCDIDNDPNRAPPC 584
T+ P +C+DG CG S CI C+G DC + +DE ++C I+ + PC
Sbjct: 783 TKPPSICKDGEFQCGSSKQCIPESKVCDGSVDCTNSADEPDNCFINECKDNNGPC 837
Score = 39.9 bits (89), Expect = 0.005
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +3
Query: 465 CGDSTCIERGLFCNGEKDCADGSDE-NSCDIDNDPNRAPPCDASQCVLPDCFCSED 629
C + CI R C+ + DC DGSDE NSC C CV+ C +D
Sbjct: 634 CTNGRCIPRRWVCDKDDDCHDGSDERNSCATMTCSENEITCGNGICVVKRWVCDQD 689
Score = 38.7 bits (86), Expect = 0.012
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
C+ C CI + C+GE DC + SDEN+C
Sbjct: 747 CKSSEYQCSTGECIHKSWVCDGEFDCLNKSDENNC 781
Score = 37.5 bits (83), Expect = 0.027
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +3
Query: 429 TEEPLCQDGFLACGDSTCIERGLFCNGEKDCADGSDENSC-DIDNDPNRAPPCDASQCVL 605
++E + F CI C+GE DC D SDE +C +P+ C +C+
Sbjct: 582 SQEAFLNNEFTCVNTQKCIAATWKCDGEDDCGDNSDEINCPKATCNPDTQFRCTNGRCIP 641
Query: 606 PDCFCSED 629
C +D
Sbjct: 642 RRWVCDKD 649
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 42.7 bits (96), Expect = 7e-04
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 438 PLCQDGFLACG-DSTCIERGLFCNGEKDCADGSDENSCDIDN-DPNRAPPCDASQCVLPD 611
P C +G CG C+ + L CNG+ DC D SDE C I AP + VL D
Sbjct: 724 PGCGNGEFYCGVPGECVPQTLRCNGQMDCRDASDEQDCGIPTVTTTSAPQPTKGKTVLGD 783
Score = 34.3 bits (75), Expect = 0.25
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Frame = +3
Query: 441 LCQDGFLACG-----DSTCIERGLFCNGEKDCA-DGSDENSC 548
LC G+ CG + +CI + L CNG DC+ G DE+ C
Sbjct: 1529 LCPSGYFYCGTGPKGEISCITKALRCNGIYDCSVTGWDEDGC 1570
>SB_21487| Best HMM Match : MAM (HMM E-Value=0)
Length = 874
Score = 42.3 bits (95), Expect = 0.001
Identities = 22/56 (39%), Positives = 26/56 (46%)
Frame = +3
Query: 432 EEPLCQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPCDASQC 599
E C C CI L C+ KDC DGSDE +C + DP R +AS C
Sbjct: 700 ENVSCTPESYKCRSGECISLDLLCDFNKDCLDGSDEENCGV-QDPGRC-NFEASFC 753
Score = 30.3 bits (65), Expect = 4.1
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 480 CIERGLFCNGEKDCADGSDENSC 548
CI G C+ DC DG DE C
Sbjct: 497 CISHGQLCDFVDDCGDGWDETGC 519
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 42.3 bits (95), Expect = 0.001
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +3
Query: 420 LLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
LL+ C G C S CI L C+G +DCAD SDE +C
Sbjct: 15 LLFRVVGCCDPGQFECTSSECIPDVLKCDGSEDCADSSDEINC 57
Score = 30.7 bits (66), Expect = 3.1
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 429 TEEPLCQ-DGFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
T+ +C+ D F + CI C+G DC G+DE C
Sbjct: 58 TKRSMCRVDQFECLIEGDCIPLSKHCDGTWDCQHGTDEMDC 98
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 40.3 bits (90), Expect = 0.004
Identities = 37/136 (27%), Positives = 52/136 (38%), Gaps = 9/136 (6%)
Frame = +3
Query: 213 CKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAI-RCPAGLFFDIEKQTCDWKEAVKNCK 389
CK+K G + + +C QC A + RCPAGL + ++K CDW V +
Sbjct: 1238 CKEKPNGHY-----ADPRDCSRFYQCDAFHRAFLHRCPAGLKWSVKKTACDWPRYVDCDR 1292
Query: 390 LKNKERKVKPLLYTEEPLCQ--------DGFLACGDSTCIERGLFCNGEKDCADGSDENS 545
+ PL T +P C DG + G+ C C D +
Sbjct: 1293 TTSTPPTPTPLTPTTKPACDLHCQTLNPDGSCTVAPGYEVVNGM-CVDTTFCKDRPHGHY 1351
Query: 546 CDIDNDPNRAPPCDAS 593
D D +R CDAS
Sbjct: 1352 AD-PRDCSRFYQCDAS 1366
Score = 38.3 bits (85), Expect = 0.016
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 198 LEQELCKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAI-RCPAGLFFDIEKQTCDWKEA 374
++ CKDK G + + +C QC A + RCPAGL + ++K TCDW
Sbjct: 988 VDTTFCKDKPNGHY-----ADPMDCSRFYQCDAFHRAFLHRCPAGLKWSVKKTTCDWPRY 1042
Query: 375 V 377
V
Sbjct: 1043 V 1043
Score = 37.1 bits (82), Expect = 0.036
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 198 LEQELCKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAI-RCPAGLFFDIEKQTCDWKEA 374
++ CKDK G + + +C QC A + RCPAGL + ++K CDW
Sbjct: 883 VDTTFCKDKPNGHY-----ADPRDCSKFYQCDAFHRAFLHRCPAGLKWSVKKTACDWPRY 937
Query: 375 V 377
V
Sbjct: 938 V 938
Score = 36.7 bits (81), Expect = 0.048
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 198 LEQELCKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAI-RCPAGLFFDIEKQTCDWKEA 374
++ CKDK G + + +C QC A + RCPAGL + ++K CDW
Sbjct: 1133 VDTTFCKDKPNGHY-----ADPRDCSRFYQCDAFHKTFLHRCPAGLKWSVKKTACDWPRY 1187
Query: 375 V 377
V
Sbjct: 1188 V 1188
Score = 33.9 bits (74), Expect = 0.34
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Frame = +3
Query: 198 LEQELCKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAI-RCPAGLFFDIEKQTCDWKEA 374
++ CKDK G + + +C QC A + RC GL + I K TCDW
Sbjct: 778 VDTTFCKDKPNGYY-----ADPRDCSRFYQCDAFHRAFLHRCSPGLKWSITKTTCDWPRN 832
Query: 375 VKNCKLKNKERKVKPLLYTEEPLC 446
V + P T +P C
Sbjct: 833 VDCDRKTPTPPSPTPPTTTPKPAC 856
Score = 30.7 bits (66), Expect = 3.1
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 198 LEQELCKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAI-RCPAGLFFDIEKQTCD 362
++ CKD+ G + + +C QC AS + RCP GL + ++K CD
Sbjct: 1338 VDTTFCKDRPHGHY-----ADPRDCSRFYQCDASHKTFLHRCPDGLKWSVKKTACD 1388
Score = 30.3 bits (65), Expect = 4.1
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 180 VKKDESLEQELCKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAIR-CPAGLFFDIEKQT 356
V + ++ CKDK + + + NC + QC ++ CP GL ++IEK
Sbjct: 1443 VVNEMCVDTSFCKDKTSDYYH-----DPRNCSRLYQCDIFHRAFLKSCPHGLKWNIEKNA 1497
Query: 357 CDWKEAVKNC 386
CD V NC
Sbjct: 1498 CDHPVNV-NC 1506
Score = 29.9 bits (64), Expect = 5.5
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 267 NCRDVIQCTASGIQAI-RCPAGLFFDIEKQTCDWKEAV 377
+C C S + RCP GL + + K+TCD+ V
Sbjct: 581 DCAQFYFCYGSAESLLSRCPRGLLWSVVKKTCDYPHLV 618
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 40.3 bits (90), Expect = 0.004
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPCDASQCVLPDCFCS 623
C AC CI+ C+G DC D SDE+ CD + C + CV C
Sbjct: 1155 CLSSKFACESGECIDVVGLCDGTDDCKDASDESRCDHKCSKDEY-QCVSGACVKWPLTCD 1213
Query: 624 -----EDGTVIPG 647
EDGT PG
Sbjct: 1214 GKKDCEDGTDEPG 1226
Score = 35.5 bits (78), Expect = 0.11
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +3
Query: 465 CGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPCDASQCVLPDCFCSEDGT 635
C + C+ R L C+G+ C D SDE +C + C++ +C+ C DGT
Sbjct: 1126 CVNGQCVSRDLICDGDNACLDFSDEANCKCLSSKF---ACESGECIDVVGLC--DGT 1177
>SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 39.9 bits (89), Expect = 0.005
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
C G C + CI R C+ + DC DGSDE C
Sbjct: 160 CGAGRYRCDNDRCIPRNWVCDRDNDCGDGSDETGC 194
Score = 38.7 bits (86), Expect = 0.012
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDND---PNRAPPCDASQCVLPDC 614
C C + C+ R C+ + DC DGSDE C+ CD +C+ +
Sbjct: 118 CSSSQFRCRNGRCVSRSWVCDKDNDCGDGSDEVQCNRAGGGWCGAGRYRCDNDRCIPRNW 177
Query: 615 FCSED 629
C D
Sbjct: 178 VCDRD 182
Score = 37.5 bits (83), Expect = 0.027
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +3
Query: 465 CGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPCDASQCVLPDCFCSED 629
C + I R C+GE DC DGSDE C + C +CV C +D
Sbjct: 88 CSNGHLIYRHWRCDGENDCRDGSDETGCGSCSSSQFR--CRNGRCVSRSWVCDKD 140
>SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 39.9 bits (89), Expect = 0.005
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 465 CGDSTCIERGLFCNGEKDCADGSDENSCD 551
C + C+ R C+G+ DC DGSDE +C+
Sbjct: 28 CENKLCVPRTWLCDGDNDCHDGSDEKNCE 56
Score = 37.9 bits (84), Expect = 0.021
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +3
Query: 465 CGDSTCIERGLFCNGEKDCADGSDEN 542
CG+STCI + C+G DCAD SDE+
Sbjct: 72 CGNSTCIPLTVLCDGLYDCADRSDES 97
>SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23)
Length = 190
Score = 39.1 bits (87), Expect = 0.009
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = +3
Query: 456 FLACGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPCDASQCVLPDCFCSEDGT 635
F D CI + C+GE DC D SDE C ++ C+ +QCV C +
Sbjct: 95 FKCVSDGKCIPKSWRCDGEMDCPDSSDEEGCVNRTCSSKEFNCN-NQCVPLSWKCDGEKD 153
Query: 636 VIPG 647
PG
Sbjct: 154 CRPG 157
>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1712
Score = 38.3 bits (85), Expect = 0.016
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +3
Query: 438 PLCQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPCDASQCVLPDCF 617
P C++ C + CI+ C+ K+C DGSDE C +PN C+ +C+
Sbjct: 1344 PPCKENQFRCDNGQCIDGDPRCDKYKNCTDGSDELGC-ATCEPNFF-RCNTGKCISARWQ 1401
Query: 618 CSE 626
C +
Sbjct: 1402 CDQ 1404
Score = 37.9 bits (84), Expect = 0.021
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 432 EEPLCQDGFLACGD--STCIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPCDASQCVL 605
E C+ +++C + CI + C+G DC D SDE C + N+ CD QC+
Sbjct: 1303 EPSTCKPNYISCASMKAICIPKMWRCDGMLDCTDKSDEEDCPPCKE-NQF-RCDNGQCID 1360
Query: 606 PDCFCSE 626
D C +
Sbjct: 1361 GDPRCDK 1367
Score = 35.9 bits (79), Expect = 0.083
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCD 551
C+ F C CI C+ DC D SDE CD
Sbjct: 1383 CEPNFFRCNTGKCISARWQCDQLDDCGDNSDEIGCD 1418
>SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45)
Length = 291
Score = 37.9 bits (84), Expect = 0.021
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
C C + CI R C+ + DC DGSDE +C
Sbjct: 134 CGSTQFRCRNGNCINRNYVCDKDNDCGDGSDEVAC 168
Score = 36.7 bits (81), Expect = 0.048
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 465 CGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPCDASQCVLPDCFCSED 629
C + C+ R C+G DC DG+DE C C C+ + C +D
Sbjct: 104 CNNGHCVHRNWKCDGSNDCRDGTDEVGCGKCGSTQFR--CRNGNCINRNYVCDKD 156
Score = 32.3 bits (70), Expect = 1.0
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
C G C + CI C+ DC D SDE+ C
Sbjct: 176 CGAGQYRCDNDRCIPLNWVCDRLNDCHDNSDESGC 210
>SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 37.9 bits (84), Expect = 0.021
Identities = 22/74 (29%), Positives = 31/74 (41%)
Frame = +3
Query: 177 TVKKDESLEQELCKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAIRCPAGLFFDIEKQT 356
TV + + CK K GE+ D CR I C CP GL ++ + +
Sbjct: 64 TVTVTADIHDDFCKYKPDGEY----RDPYDACRGFIHCHNYNASYKPCPGGLLYNEKTKQ 119
Query: 357 CDWKEAVKNCKLKN 398
CDW V +C + N
Sbjct: 120 CDWPRNV-DCPMGN 132
>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 37.5 bits (83), Expect = 0.027
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
C+ G C + CI L C+ + DC D SDE C
Sbjct: 5 CKAGDFRCANGRCISGALVCDLDDDCGDESDERGC 39
>SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16)
Length = 187
Score = 37.5 bits (83), Expect = 0.027
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
C C +S C++R CN + DC D SDE C
Sbjct: 145 CLASQYVCANSKCVDRDQLCNFKDDCGDNSDELPC 179
>SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 37.5 bits (83), Expect = 0.027
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +3
Query: 423 LYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
L + E C C + CI+ CN +DC DGSDE SC
Sbjct: 385 LVSSEGPCGPKKFTCQNRQCIDDFKQCNNRQDCRDGSDEISC 426
>SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27)
Length = 157
Score = 37.5 bits (83), Expect = 0.027
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 465 CGDSTCIERGLFCNGEKDCADGSDENSC 548
C + CI R C+ + DC DGSDE +C
Sbjct: 7 CRNGNCINRNYVCDKDNDCGDGSDEVAC 34
Score = 32.3 bits (70), Expect = 1.0
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
C G C + CI C+ DC D SDE+ C
Sbjct: 42 CGAGQYRCDNDRCIPLNWVCDRLNDCHDNSDESGC 76
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 37.1 bits (82), Expect = 0.036
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 444 CQDGFLACG-DSTCIERGLFCNGEKDCADGSDENSC 548
CQ C D CI C+GE DC DG DE C
Sbjct: 338 CQSNEFYCSKDDRCINIFWKCDGESDCTDGEDEQGC 373
Score = 36.7 bits (81), Expect = 0.048
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 480 CIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPC 584
C+ R L C+G+ DC+D SDE C + NR C
Sbjct: 1356 CLNRTLQCDGKPDCSDYSDEAHCRVRKSINRNVVC 1390
Score = 33.9 bits (74), Expect = 0.34
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 444 CQDGFLACGDST-CIERGLFCNGEKDCADGSDENSC 548
C D C S CI+ C+G DC D SDE+ C
Sbjct: 1303 CNDDQFQCRASKICIKSSFVCDGVPDCNDHSDEDDC 1338
>SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22)
Length = 133
Score = 37.1 bits (82), Expect = 0.036
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 444 CQDGFLACGDST-CIERGLFCNGEKDCADGSDENSCDIDN 560
C +G AC + C+ + C+ DC DGSDE +C I +
Sbjct: 88 CAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDEKNCPISS 127
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 36.7 bits (81), Expect = 0.048
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 444 CQDGFLACGDST-CIERGLFCNGEKDCADGSDENSCDI 554
C +G AC + C+ + C+ DC DGSDE +C I
Sbjct: 901 CAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDEKNCPI 938
>SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16)
Length = 518
Score = 36.3 bits (80), Expect = 0.063
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 249 VAGEGDNCRDVIQCTASGIQAIRCPAGLFFDIEKQTCDWKEAVK 380
+ E +NC + C CP GL F+ + CDW VK
Sbjct: 465 IYAEKENCYGFVLCGGGIAHKKTCPPGLIFNTDLMVCDWSHEVK 508
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 36.3 bits (80), Expect = 0.063
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +3
Query: 213 CKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAIRCPAGLFFDIEKQTCDWKEAVKNCK 389
C++K G++ + NC I C+ CP L FD +K C+W V NCK
Sbjct: 597 CEEKKNGDY-----ADPSNCNGFITCSNGYAYKRDCPFNLKFDTKKLECEWPNKV-NCK 649
Score = 34.7 bits (76), Expect = 0.19
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 258 EGDNCRDVIQCTASGIQAIRCPAGLFFDIEKQTCDWKEAV 377
+ +NC + C+ I + CP+ L +D K C+W + V
Sbjct: 528 DANNCNGFVMCSNGYIYYMDCPSNLRYDPAKGRCEWADTV 567
Score = 29.5 bits (63), Expect = 7.2
Identities = 23/89 (25%), Positives = 34/89 (38%)
Frame = +3
Query: 264 DNCRDVIQCTASGIQAIRCPAGLFFDIEKQTCDWKEAVKNCKLKNKERKVKPLLYTEEPL 443
D C I C+ + CP L F+ + CD E V+ + KV P T+ P
Sbjct: 455 DACEGFISCSNHITYHMPCPENLRFNPTTKHCDNPENVQCGPTRPPTPKVPPT--TKAPF 512
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADG 530
+ F + CNG C++G
Sbjct: 513 TKSPFCVGKQNGKYADANNCNGFVMCSNG 541
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 35.9 bits (79), Expect = 0.083
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +3
Query: 438 PLCQDGFLACGDS-TCIERGLFCNGEKDCADGSDEN-SCDID 557
P C G C + CI C+G +DC DG DE C+ID
Sbjct: 209 PPCMPGEFKCQSTGRCIPESKVCDGTRDCQDGEDEPLRCNID 250
>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
Length = 2282
Score = 35.1 bits (77), Expect = 0.15
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPCDASQCVLPDCFCS 623
C L C C++ C+G +DC G DE C D N C S C+ C+
Sbjct: 245 CFTNELTCSSGRCVQSINLCDGVRDCEYGLDELRCG-DGCKNSEFLCPDSTCIPWSSTCN 303
Query: 624 E 626
+
Sbjct: 304 Q 304
Score = 31.9 bits (69), Expect = 1.4
Identities = 15/59 (25%), Positives = 24/59 (40%)
Frame = +3
Query: 372 AVKNCKLKNKERKVKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
A+ + + ++ PL C C CI C+G+ +C D SDE+ C
Sbjct: 185 AIDDIMITTEKCATSPLYAAPGYKCAPYEFQCTSGHCISGSSRCDGDYNCMDRSDEDGC 243
>SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 34.7 bits (76), Expect = 0.19
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 480 CIERGLFCNGEKDCADGSDENSCDIDNDPNR 572
CI+ C+G+ +CAD SDEN C +P+R
Sbjct: 285 CIDISYKCDGKPECADHSDENDCPPLINPDR 315
Score = 33.1 bits (72), Expect = 0.59
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +3
Query: 432 EEPLCQDGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDND 563
+ P + C CI C+G+ DC D SDE SC ND
Sbjct: 355 DAPCKISSWFKCRSGVCIPPQWICDGKDDCGDRSDE-SCSWIND 397
>SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064)
Length = 48
Score = 34.7 bits (76), Expect = 0.19
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Frame = +3
Query: 441 LCQDGFLACG-----DSTCIERGLFCNGEKDCA-DGSDENSC 548
LC G+ CG + +CI + L CNG DC+ G DE+ C
Sbjct: 6 LCPSGYFYCGTGPKGEISCINKALRCNGIYDCSVTGWDEDGC 47
>SB_58073| Best HMM Match : CBM_14 (HMM E-Value=1.4e-17)
Length = 225
Score = 33.9 bits (74), Expect = 0.34
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 264 DNCRDVIQCTASGIQAIRCPAGLFFDIEKQTCDW 365
D C+ I C+ + CPAGL ++ EK+ CDW
Sbjct: 98 DFCKMYIACSNGIAYEMPCPAGLNWNDEKKYCDW 131
>SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11)
Length = 65
Score = 33.9 bits (74), Expect = 0.34
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 450 DGFLACGDSTCIERGLFCNGEKDCADGSDENSCDIDNDPN 569
D C + CI C+ E DC D SDE +C ++ N
Sbjct: 9 DTSFKCDNGRCISATWVCDTENDCGDNSDEMNCSKYDNKN 48
>SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 33.9 bits (74), Expect = 0.34
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 444 CQDGFLACGDST-CIERGLFCNGEKDCADGSDENSC 548
C D C S CI+ C+G DC D SDE+ C
Sbjct: 6 CNDDQFQCRASKICIKSSFVCDGVPDCNDHSDEDDC 41
Score = 32.7 bits (71), Expect = 0.77
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 480 CIERGLFCNGEKDCADGSDENSC 548
C+ R L C+G+ DC+D SDE C
Sbjct: 59 CLNRTLQCDGKPDCSDYSDEAHC 81
>SB_2355| Best HMM Match : Carn_acyltransf (HMM E-Value=0)
Length = 1559
Score = 33.5 bits (73), Expect = 0.44
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +1
Query: 112 PRVSCSPALLLMGTDGGDKLRKQ*RKTRVWNKSYARTRTLANGSGWWLARATTVATSSNV 291
P V+CS A G D++ + RK W+ + + G L T+AT++
Sbjct: 1410 PTVACSEAFNTAHRAGVDEMMDRIRKATAWHAKLTKEAAMGQGFDRHLFALRTIATAAGQ 1469
Query: 292 PPRVFK 309
P +F+
Sbjct: 1470 KPDIFE 1475
>SB_1784| Best HMM Match : CBM_14 (HMM E-Value=7e-18)
Length = 123
Score = 33.1 bits (72), Expect = 0.59
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 264 DNCRDVIQCTASGIQAIRCPAGLFFDIEKQTCDW 365
+NC+ I C+ +CPAGL ++ K+ CDW
Sbjct: 74 ENCKMYITCSNKITYERQCPAGLNWNDAKKWCDW 107
>SB_664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1046
Score = 33.1 bits (72), Expect = 0.59
Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -1
Query: 655 GKSPGITVPSS-EQKQSGRTHCDASQGGARLGSLS-ISQEFSSEPSAQSFSPL 503
G PG T +S E Q T C +S + GSLS S+EFS S Q F PL
Sbjct: 369 GSDPGSTSEASAELNQVLETSCTSSVTSSMDGSLSSFSKEFSLRESHQGFGPL 421
>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
Length = 339
Score = 32.7 bits (71), Expect = 0.77
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 267 NCRDVIQCTASGIQAIR-CPAGLFFDIEKQTCDWKEAV 377
NC QC A + CP+GL + + K TCDW V
Sbjct: 128 NCSRFYQCDAFHKAFLHSCPSGLKWSVTKTTCDWPRYV 165
>SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15)
Length = 220
Score = 32.7 bits (71), Expect = 0.77
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 267 NCRDVIQCTASGIQAIR-CPAGLFFDIEKQTCDWKEAV 377
NC QC A + CP+GL + + K TCDW V
Sbjct: 35 NCSRFYQCDAFHKAFLHSCPSGLKWSVTKTTCDWPRYV 72
>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
Length = 1055
Score = 32.3 bits (70), Expect = 1.0
Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKD----CADGSDENSCDIDNDPNRAPPCDASQCVL 605
C+ C + CI + C G CDI DP + PC QCVL
Sbjct: 991 CEHAMNTCYSNPCIHGNCLVRDDSSFECICHKGFTGTKCDIRVDPCASSPCAHGQCVL 1048
>SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 32.3 bits (70), Expect = 1.0
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
C L C C+ C+G KDC G DE C
Sbjct: 311 CFTNELTCSSGRCVPSINLCDGVKDCEQGLDELRC 345
Score = 29.1 bits (62), Expect = 9.5
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
C C CI C+ + +C D SDE+ C
Sbjct: 275 CASYEFQCTSGHCISGSSRCDSDYNCMDSSDEDGC 309
>SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 31.9 bits (69), Expect = 1.4
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDE 539
C + C C+ C+G DC+D SDE
Sbjct: 216 CSEEEFPCASGDCVPLTSVCDGSADCSDSSDE 247
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 31.9 bits (69), Expect = 1.4
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
C L C C+ C+G KDC G DE C
Sbjct: 1140 CFTNELTCSSGRCVPSINLCDGVKDCEHGLDELRC 1174
Score = 29.1 bits (62), Expect = 9.5
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
C C CI C+ + +C D SDE+ C
Sbjct: 1104 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC 1138
>SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 31.9 bits (69), Expect = 1.4
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
C L C C+ C+G KDC G DE C
Sbjct: 230 CFTNELTCSSGRCVPSINLCDGVKDCEHGLDELRC 264
Score = 29.1 bits (62), Expect = 9.5
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
C C CI C+ + +C D SDE+ C
Sbjct: 194 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC 228
>SB_52147| Best HMM Match : EGF (HMM E-Value=0)
Length = 364
Score = 31.1 bits (67), Expect = 2.4
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 465 CGDSTCIER--GLFCNGEKDCADGSDENSCDIDNDPNRAPPCDASQCV 602
C D TCI++ +C +C G SCD D ++ PC+ C+
Sbjct: 142 CNDGTCIQQTGSFYC----ECLAGYTGQSCDTMIDACQSNPCNDGTCI 185
Score = 30.7 bits (66), Expect = 3.1
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 465 CGDSTCIER--GLFCNGEKDCADGSDENSCDIDNDPNRAPPCDASQCVLPD 611
C D TCI++ +C +C G SCD D ++ PC C+ PD
Sbjct: 179 CNDGTCIQQTGSFYC----ECLTGYTGQSCDTMIDACQSNPCVHGTCI-PD 224
>SB_41873| Best HMM Match : Homeobox (HMM E-Value=2.3e-29)
Length = 651
Score = 30.7 bits (66), Expect = 3.1
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +1
Query: 679 LPSLLMMPSTITTSNFTKRSSMENVKIPXVVTSKLRSLYRISTPITLPYRRHTGXGTKSL 858
L L ST+T S ++++ N+ +P V + S+YR P TL T ++L
Sbjct: 316 LSRLPSFSSTLTLSVYSRKGITPNIALPVVWLCRAYSVYRYLAPFTLVPMSRT--RDRNL 373
Query: 859 YTQL 870
Y +L
Sbjct: 374 YNKL 377
>SB_33807| Best HMM Match : RNA_pol (HMM E-Value=2.7e-10)
Length = 469
Score = 29.9 bits (64), Expect = 5.5
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = +3
Query: 465 CGDSTCIERGLFCNGEKDCADGSD---ENSCDIDNDPNRAPPCDASQ 596
C D + G C+G C G D ++SCD+ D + CD +
Sbjct: 412 CDDDDSCDVGKDCDGYDSCDVGEDCEGDDSCDVGEDCDGNDSCDVGE 458
>SB_45190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 581
Score = 29.9 bits (64), Expect = 5.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 659 CWQVTGYHSAVFGTEAVGQDTL*RVTRWSSVGIV 558
CW + G++S V G + DTL + R GIV
Sbjct: 160 CWNLNGFNSRVVGNKLKFNDTLSTIKRHDIFGIV 193
>SB_41869| Best HMM Match : Laminin_EGF (HMM E-Value=9.7e-23)
Length = 198
Score = 29.9 bits (64), Expect = 5.5
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +3
Query: 426 YTEEPLCQDGFLACGDSTCIERGLFCNGE----KDCADGSDENSCDIDNDPNRAPPC 584
YT +P+ F C +C +R FC+ E DC G+ C++ + + P C
Sbjct: 2 YTRQPMGGTPFDRCVLCSCNDRSRFCHPETGVCTDCKIGTHGYRCELCTNNVQGPEC 58
Score = 29.5 bits (63), Expect = 7.2
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +3
Query: 426 YTEEPLCQDGFLACGDSTCIERGLFCNGE----KDCADGSDENSCDIDNDPNRAPPC 584
YT +P+ F C +C +R FC+ E DC G+ C++ + + P C
Sbjct: 70 YTRQPMGGTPFDRCVLCSCNDRSRFCHPETGVCTDCKIGTHGYRCELCTNYVQGPEC 126
>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1706
Score = 29.9 bits (64), Expect = 5.5
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +3
Query: 426 YTEEPLCQDGFLACGDSTCIERGLFCNGE----KDCADGSDENSCDIDNDPNRAPPC 584
YT +P+ F C +C +R FC+ E DC G+ C++ + + P C
Sbjct: 992 YTRQPMGGTPFDRCVLCSCNDRSRFCHPETGVCTDCKIGTHGYRCELCTNNVQGPEC 1048
>SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)
Length = 413
Score = 29.9 bits (64), Expect = 5.5
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +3
Query: 477 TCIERGLFCNGEKDCADGSDENSCDIDNDPNRAPPCDASQCVL-PDC 614
T I R +C+ + C GS N +N +P CD C + DC
Sbjct: 18 TKIVRAEYCSSDFSCNYGSGRNRICCNNHCTYSPTCDGYSCSMDSDC 64
>SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 29.5 bits (63), Expect = 7.2
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
C L C C+ C+G KDC DE C
Sbjct: 267 CFTNELTCSSGRCVPSINLCDGVKDCEQDLDELRC 301
Score = 29.1 bits (62), Expect = 9.5
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +3
Query: 444 CQDGFLACGDSTCIERGLFCNGEKDCADGSDENSC 548
C C CI C+ + +C D SDE+ C
Sbjct: 231 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC 265
>SB_17635| Best HMM Match : CUB (HMM E-Value=0)
Length = 630
Score = 29.1 bits (62), Expect = 9.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 465 CGDSTCIERGLFCNGEKDCADGSDENSC 548
C + I+ C+G DC D SDE++C
Sbjct: 424 CDNDNYIQCQWKCDGTDDCGDHSDEDNC 451
>SB_47133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 29.1 bits (62), Expect = 9.5
Identities = 25/81 (30%), Positives = 37/81 (45%)
Frame = +1
Query: 556 TTIPTELHLVTRHSVSCPTASVPKTAL*YPVTCQQKTYPR*LPSLLMMPSTITTSNFTKR 735
++ PT H VT SVS PT+S T + VT + PS P TTS T +
Sbjct: 40 SSTPTTQHQVTTTSVSSPTSSTSTTQ--HQVTTTSVS----TPSTTTPPR--TTSISTTK 91
Query: 736 SSMENVKIPXVVTSKLRSLYR 798
++ P VT+ + ++ R
Sbjct: 92 TTRVTTSTPSAVTTAVTTVVR 112
>SB_8216| Best HMM Match : Metallothio_2 (HMM E-Value=0.71)
Length = 628
Score = 29.1 bits (62), Expect = 9.5
Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Frame = +3
Query: 342 IEKQTCDWKEAVKNCKLKNKERKVKPLLYTEEPL--CQDG-FLACGDSTCIERGLFCNGE 512
+E+ + EA + +L+ +++++K +E C D + D I++ + NG
Sbjct: 330 LEQVVEEISEAERAKELRREQKRLKKKAKRKEKFKCCPDAEIIEIKDKDPIQKHMCSNGS 389
Query: 513 KDCADGSDENSCDIDNDPNRAP---PCDASQC 599
+ +G E SC+ ++D + C+ QC
Sbjct: 390 TEDIEGGHEGSCEEEDDGDSIDTPCSCEDMQC 421
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,413,497
Number of Sequences: 59808
Number of extensions: 792742
Number of successful extensions: 2848
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 2255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2818
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4812488570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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