Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_E10_e173_10.seq
         (1489 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57140.2 68416.m06362 patatin-related contains Patatin domain...    31   2.6  
At3g57140.1 68416.m06361 patatin-related contains Patatin domain...    31   2.6  
At5g50070.1 68418.m06200 invertase/pectin methylesterase inhibit...    29   5.9  
At2g18690.1 68415.m02177 expressed protein                             29   5.9  
At1g63670.1 68414.m07205 expressed protein                             29   7.8  

>At3g57140.2 68416.m06362 patatin-related contains Patatin domain
           PF01734
          Length = 801

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = -1

Query: 658 AGKSPGITVPSSEQKQSGRTHCDASQGGARLGSLSISQEFSSEPSAQSFSPLQKRPRSIQ 479
           +  S  ITV   +  Q+GRTH        R  +L ++ E      +Q+ S + + P S+Q
Sbjct: 715 SSSSHSITVTEGDYLQTGRTHNGFVLNLVRGENLRMNSE---PEDSQNESEIPETPESVQ 771

Query: 478 VESPQ 464
           ++SP+
Sbjct: 772 LDSPE 776


>At3g57140.1 68416.m06361 patatin-related contains Patatin domain
           PF01734
          Length = 801

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = -1

Query: 658 AGKSPGITVPSSEQKQSGRTHCDASQGGARLGSLSISQEFSSEPSAQSFSPLQKRPRSIQ 479
           +  S  ITV   +  Q+GRTH        R  +L ++ E      +Q+ S + + P S+Q
Sbjct: 715 SSSSHSITVTEGDYLQTGRTHNGFVLNLVRGENLRMNSE---PEDSQNESEIPETPESVQ 771

Query: 478 VESPQ 464
           ++SP+
Sbjct: 772 LDSPE 776


>At5g50070.1 68418.m06200 invertase/pectin methylesterase inhibitor
           family protein low similarity to pollen-specific protein
           Bnm1 [Brassica napus] GI:1857671; contains Pfam profile
           PF04043: Plant invertase/pectin methylesterase inhibitor
          Length = 183

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 369 EAVKNCKLKNKERKVKPLLYTEEPLCQDGFLACGDS 476
           +A K+    N   K +P L T+   CQ+ F++ GDS
Sbjct: 81  QAKKSASFANGAAKKEPSLKTQFQTCQEAFVSIGDS 116


>At2g18690.1 68415.m02177 expressed protein
          Length = 322

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = -3

Query: 446 TKRLFGVKKRLHFSLLVFKFAVFNCLFPVASLFLNVEEQTS 324
           +++LF   K+L FS+LVF   + NCL    ++F+ V E T+
Sbjct: 20  SRKLFLKNKKLMFSVLVFPL-LLNCLVYFLNIFVIVPEITN 59


>At1g63670.1 68414.m07205 expressed protein
          Length = 689

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
 Frame = +3

Query: 534 DENSCDIDNDPNRAPPCDASQCVLPDCFCSEDGTVIPGDLPAKDVPQMITITFD----DA 701
           +   C+I +DP +     +   VL      ED TVIPG++   ++ + I ++FD    D 
Sbjct: 463 ERQDCNI-HDPKQEQEQPSPVSVLERIHL-EDETVIPGNVKISNLEEKIGLSFDDPNIDL 520

Query: 702 INNNNI-ELYKEIFNGKRKN 758
           I   ++ E  K++    R N
Sbjct: 521 IEKESVHEFVKKVLEASRLN 540


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,411,633
Number of Sequences: 28952
Number of extensions: 532916
Number of successful extensions: 1592
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1590
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3961461312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)