Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_E09_e165_09.seq
         (1463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    44   5e-05

>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 21/56 (37%), Positives = 34/56 (60%)
 Frame = +1

Query: 244 SRAGCVIGKAGAKIKELREKTGARLKIFSNQAPQSTERIVQLVGKPDSIIAGIREV 411
           S  G +IG+ G +IK +++K   R+    +  PQSTER V++ G  D++ A I E+
Sbjct: 188 SLMGSIIGRNGLRIKLIQDKCSCRMIASKDMLPQSTERTVEIHGTVDNLHAAIWEI 243



 Score = 38.3 bits (85), Expect = 0.003
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +1

Query: 253 GCVIGKAGAKIKELREKTGARLKIFSNQAPQSTERIVQLVG 375
           GC+IG+ G+KI E+R  +G+++ I      ++ ER+  + G
Sbjct: 333 GCIIGRGGSKISEIRRTSGSKISIAKEPHDETGERMFTITG 373



 Score = 37.9 bits (84), Expect = 0.003
 Identities = 16/57 (28%), Positives = 32/57 (56%)
 Frame = +1

Query: 250 AGCVIGKAGAKIKELREKTGARLKIFSNQAPQSTERIVQLVGKPDSIIAGIREVLDL 420
           AG +IGKAG  + ELR  T  +  + +   P   +R++ + G  ++++   R ++D+
Sbjct: 105 AGIIIGKAGKNVAELRSTTNVKAGV-TKAVPNVHDRVLTISGPLENVVRAYRFIIDI 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,137
Number of Sequences: 5004
Number of extensions: 34991
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 814673514
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)