Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_E09_e165_09.seq
(1463 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53788| Best HMM Match : KH_1 (HMM E-Value=0) 47 4e-05
SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41) 44 3e-04
SB_21167| Best HMM Match : KH_1 (HMM E-Value=0) 37 0.035
SB_42869| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.081
SB_3277| Best HMM Match : KH_1 (HMM E-Value=4.3e-30) 36 0.11
SB_24937| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.33
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.76
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 32 1.3
SB_27288| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.1
>SB_53788| Best HMM Match : KH_1 (HMM E-Value=0)
Length = 356
Score = 46.8 bits (106), Expect = 4e-05
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Frame = +1
Query: 244 SRAGCVIGKAGAKIKELREKTGARLKIFSNQAPQ-STERIVQLVGKPDSIIA 396
S AG +IGKAG+ IK + E+TGAR++I A + ERIV + G P+ + A
Sbjct: 112 STAGMIIGKAGSAIKSISEQTGARIQISQKDAESVAGERIVCVGGSPEQVTA 163
Score = 42.3 bits (95), Expect = 0.001
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Frame = +1
Query: 250 AGCVIGKAGAKIKELREKTGARLKIFSNQA--PQSTERIVQLVGKPDSIIAGIREVLD 417
AG +IGK G I ++++ TGAR+K+ N P + ERI ++G+ ++I+ + V+D
Sbjct: 23 AGSIIGKGGQNIAQVQQTTGARIKLSPNNQYYPGTQERIGLIMGEVENIVQMLDFVID 80
>SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41)
Length = 487
Score = 44.0 bits (99), Expect = 3e-04
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +3
Query: 12 AAGIXTRG-TNISKLRSQYKASITVPDCPGPERVLSILTEDVDTLLEIVKEILPCLSD 182
A GI +G TNI +LR++Y A + VPD ERVL+I T + L+I+ E++P + +
Sbjct: 64 AGGIIGKGGTNIRRLRTEYNAVVNVPDTNSNERVLTI-TAPRQSALDILAEVVPKIGE 120
Score = 31.5 bits (68), Expect = 1.8
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +1
Query: 244 SRAGCVIGKAGAKIKELREKTGA 312
S+ G +IG+AG KIKE+RE + A
Sbjct: 134 SQVGSIIGRAGYKIKEIREASSA 156
>SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)
Length = 1650
Score = 37.1 bits (82), Expect = 0.035
Identities = 18/52 (34%), Positives = 34/52 (65%)
Frame = +1
Query: 259 VIGKAGAKIKELREKTGARLKIFSNQAPQSTERIVQLVGKPDSIIAGIREVL 414
+IG+ GA I+++RE TGAR+ +F A + ++ ++GK +++ A E+L
Sbjct: 748 LIGRGGASIRKVRENTGARI-VFP-AAKDEDKELITIIGKQEAVEAAKDELL 797
>SB_42869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 35.9 bits (79), Expect = 0.081
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +1
Query: 193 KETSTIKIWTSVY*YIMSRAGCVIGKAGAKIKELREKTGARLKIFSNQAPQ-STERIVQL 369
K T+ +IW + I+ G +IG+ G +K + +++GA++++ + ST RI+ L
Sbjct: 174 KYTTDKEIWEIEFPQIL--CGRLIGRKGKNVKAISDQSGAKIRLIPQSPGEVSTHRIISL 231
Query: 370 VGKPDSIIAGIREVLD 417
G I + + + D
Sbjct: 232 SGDSSQIKSALDSIHD 247
>SB_3277| Best HMM Match : KH_1 (HMM E-Value=4.3e-30)
Length = 379
Score = 35.5 bits (78), Expect = 0.11
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +1
Query: 244 SRAGCVIGKAGAKIKELREKTGA 312
S+ G +IGK GAKIKE+RE +GA
Sbjct: 98 SQCGSIIGKGGAKIKEIREVSGA 120
>SB_24937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 589
Score = 33.9 bits (74), Expect = 0.33
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +1
Query: 259 VIGKAGAKIKELREKTGARLKIFSNQAPQSTER--IVQLVGKPDSIIAGIREVLD 417
+IGK GA IK + ++TGA + P T+R +V L G +S+I ++LD
Sbjct: 484 IIGKNGANIKHITQQTGASVNF---PDPNGTQRKGVVFLSGSVESVICARAQLLD 535
>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 32.7 bits (71), Expect = 0.76
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +1
Query: 253 GCVIGKAGAKIKELREKTGARLKIF-SNQAPQSTERIVQLVGKPDSI 390
G VIGK G IK ++ ++GAR++ + P S++R+ + G + I
Sbjct: 225 GFVIGKGGETIKRIQAESGARVQFNPAKDNPNSSDRMATVQGSQEQI 271
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 31.9 bits (69), Expect = 1.3
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 259 VIGKAGAKIKELREKTGARLKIFSNQAPQSTERIVQLVGKPDS 387
+IG+AG + +RE TGA + I +++ + I+ + G D+
Sbjct: 924 IIGRAGCNVNAIRETTGAHIDIDTSRQKSTGSCIITIKGPADA 966
>SB_27288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 30.7 bits (66), Expect = 3.1
Identities = 16/59 (27%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +1
Query: 184 EDLKETSTIKIW-TSVY*YI-MSRAGCVIGKAGAKIKELREKTGARLKIFSNQAPQSTE 354
E+ ++TS ++ TS+ + S +G +IG+ GA IK+++++TG + + P+ +
Sbjct: 43 EETEQTSVATVFETSLELKVPASVSGVIIGRGGANIKKIQKETGTYINFKDDDEPKEKD 101
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,570,915
Number of Sequences: 59808
Number of extensions: 275386
Number of successful extensions: 838
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4718586354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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