Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_E09_e165_09.seq
(1463 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g04430.2 68418.m00438 KH domain-containing protein NOVA, puta... 49 9e-06
At5g04430.1 68418.m00437 KH domain-containing protein NOVA, puta... 49 9e-06
At1g14170.1 68414.m01675 KH domain-containing protein location o... 44 2e-04
At5g64390.2 68418.m08088 KH domain-containing RNA-binding protei... 40 0.003
At5g64390.1 68418.m08089 KH domain-containing RNA-binding protei... 40 0.003
At3g04610.1 68416.m00493 KH domain-containing protein similar pu... 38 0.017
At2g25970.1 68415.m03117 KH domain-containing protein 38 0.017
At1g51580.1 68414.m05806 KH domain-containing protein 37 0.029
At5g15270.2 68418.m01789 KH domain-containing protein various pr... 36 0.051
At5g15270.1 68418.m01788 KH domain-containing protein various pr... 36 0.051
At5g53060.1 68418.m06592 KH domain-containing protein 36 0.067
At4g26000.1 68417.m03745 KH domain-containing protein single-str... 34 0.20
At5g46190.1 68418.m05681 KH domain-containing protein strong sim... 33 0.36
At4g18375.2 68417.m02727 KH domain-containing protein contains s... 33 0.36
At4g18375.1 68417.m02726 KH domain-containing protein contains s... 33 0.36
At5g09560.1 68418.m01107 KH domain-containing protein various pr... 33 0.47
At4g10070.1 68417.m01647 KH domain-containing protein DNA-direct... 33 0.47
At3g12130.1 68416.m01509 KH domain-containing protein / zinc fin... 33 0.62
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin... 32 0.83
At2g03110.1 68415.m00264 KH domain-containing protein 31 1.9
At1g33680.1 68414.m04166 KH domain-containing protein similar to... 31 2.5
At1g04970.2 68414.m00496 lipid-binding serum glycoprotein family... 30 3.3
At1g04970.1 68414.m00495 lipid-binding serum glycoprotein family... 30 3.3
At4g03500.1 68417.m00477 ankyrin repeat family protein contains ... 29 5.8
>At5g04430.2 68418.m00438 KH domain-containing protein NOVA,
putative astrocytic NOVA-like RNA-binding protein, Homo
sapiens, U70477
Length = 334
Score = 48.8 bits (111), Expect = 9e-06
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Frame = +1
Query: 250 AGCVIGKAGAKIKELREKTGARLKIFSNQA--PQSTERIVQLVGKPDSIIAGIREVLD 417
AG VIGK G+ I E + K+GAR+++ NQ P +T+RI+ + G ++ G+ +LD
Sbjct: 46 AGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVNGLELILD 103
Score = 31.5 bits (68), Expect = 1.4
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 253 GCVIGKAGAKIKELREKTGARLKIFSNQAPQS--TERIVQLVGKPDSI 390
G V+G+ G I E+ + TGAR+KI S T+R V + G +I
Sbjct: 267 GLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSITGPQRAI 314
>At5g04430.1 68418.m00437 KH domain-containing protein NOVA,
putative astrocytic NOVA-like RNA-binding protein, Homo
sapiens, U70477
Length = 313
Score = 48.8 bits (111), Expect = 9e-06
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Frame = +1
Query: 250 AGCVIGKAGAKIKELREKTGARLKIFSNQA--PQSTERIVQLVGKPDSIIAGIREVLD 417
AG VIGK G+ I E + K+GAR+++ NQ P +T+RI+ + G ++ G+ +LD
Sbjct: 46 AGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVNGLELILD 103
Score = 31.5 bits (68), Expect = 1.4
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 253 GCVIGKAGAKIKELREKTGARLKIFSNQAPQS--TERIVQLVGKPDSI 390
G V+G+ G I E+ + TGAR+KI S T+R V + G +I
Sbjct: 246 GLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSITGPQRAI 293
>At1g14170.1 68414.m01675 KH domain-containing protein location of
EST 219C14T7 , gb|N38506
Length = 454
Score = 44.4 bits (100), Expect = 2e-04
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Frame = +1
Query: 244 SRAGCVIGKAGAKIKELREKTGARLKIFSNQ----APQSTERIVQLVGKPDSIIAGIREV 411
S+ GC+IGK GA I E+R T A ++I + + E +VQ+ G PD+ + + +V
Sbjct: 338 SQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQV 397
Query: 412 L 414
+
Sbjct: 398 I 398
Score = 36.7 bits (81), Expect = 0.038
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +1
Query: 187 DLKETSTIKIWTSVY*YIMSRAGCVIGKAGAKIKELREKTGARLKIFSNQAPQ-----ST 351
DL E T+ + V + GCVIGK G I+ LR T A++++ + P S
Sbjct: 114 DLGEKQTVTVRMLVP---SDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLPACALTLSH 170
Query: 352 ERIVQLVGKPDSIIAGIREVLDL 420
+ ++ ++G+P + + +V L
Sbjct: 171 DELLLIIGEPLVVREALYQVASL 193
Score = 29.5 bits (63), Expect = 5.8
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = +1
Query: 253 GCVIGKAGAKIKELREKTGARLKIFSNQ 336
G VIGK G I ++R++TGA +++ +++
Sbjct: 256 GGVIGKGGGFINQIRQETGATIRVNTSE 283
>At5g64390.2 68418.m08088 KH domain-containing RNA-binding protein
(HEN4) contains similarity to RNA-binding protein;
identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
contains Pfam domain PF00013: KH domain; identical to
cDNA HEN4 (HEN4) GI:28261402
Length = 824
Score = 40.3 bits (90), Expect = 0.003
Identities = 17/49 (34%), Positives = 32/49 (65%)
Frame = +1
Query: 241 MSRAGCVIGKAGAKIKELREKTGARLKIFSNQAPQSTERIVQLVGKPDS 387
+S G VIGK+G IK+L++ TGA++++ S +R++ ++ + DS
Sbjct: 55 LSHVGAVIGKSGNVIKQLQQSTGAKIRV-EEPPSGSPDRVITIIAQADS 102
Score = 37.9 bits (84), Expect = 0.017
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Frame = +1
Query: 244 SRAGCVIGKAGAKIKELREKTGARLKIFS-NQAPQ---STERIVQLVGK 378
S+ GCV+GK G + E+R+ TGA ++I Q P+ +++VQ+ G+
Sbjct: 551 SQIGCVLGKGGVIVSEMRKTTGAAIQILKVEQNPKCISENDQVVQITGE 599
Score = 31.5 bits (68), Expect = 1.4
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 244 SRAGCVIGKAGAKIKELREKTGARLKIFSNQAPQSTERIVQLVGKPDSIIA 396
S AG VIGK G + +R++TG ++ I P + ++V + IA
Sbjct: 159 SHAGAVIGKGGQMVGSIRKETGCKISIRIENLPICADTDDEMVEVEGNAIA 209
>At5g64390.1 68418.m08089 KH domain-containing RNA-binding protein
(HEN4) contains similarity to RNA-binding protein;
identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
contains Pfam domain PF00013: KH domain; identical to
cDNA HEN4 (HEN4) GI:28261402
Length = 857
Score = 40.3 bits (90), Expect = 0.003
Identities = 17/49 (34%), Positives = 32/49 (65%)
Frame = +1
Query: 241 MSRAGCVIGKAGAKIKELREKTGARLKIFSNQAPQSTERIVQLVGKPDS 387
+S G VIGK+G IK+L++ TGA++++ S +R++ ++ + DS
Sbjct: 55 LSHVGAVIGKSGNVIKQLQQSTGAKIRV-EEPPSGSPDRVITIIAQADS 102
Score = 37.9 bits (84), Expect = 0.017
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Frame = +1
Query: 244 SRAGCVIGKAGAKIKELREKTGARLKIFS-NQAPQ---STERIVQLVGK 378
S+ GCV+GK G + E+R+ TGA ++I Q P+ +++VQ+ G+
Sbjct: 551 SQIGCVLGKGGVIVSEMRKTTGAAIQILKVEQNPKCISENDQVVQITGE 599
Score = 31.5 bits (68), Expect = 1.4
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 244 SRAGCVIGKAGAKIKELREKTGARLKIFSNQAPQSTERIVQLVGKPDSIIA 396
S AG VIGK G + +R++TG ++ I P + ++V + IA
Sbjct: 159 SHAGAVIGKGGQMVGSIRKETGCKISIRIENLPICADTDDEMVEVEGNAIA 209
>At3g04610.1 68416.m00493 KH domain-containing protein similar
putative nucleic acid binding protein GB:CAB39665
[Arabidopsis thaliana]; Pfam HMM hit: KH domain family
of RNA binding proteins
Length = 577
Score = 37.9 bits (84), Expect = 0.017
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +1
Query: 247 RAGCVIGKAGAKIKELREKTGARLKIFSNQAPQSTERIVQLVGKPD 384
+ G +IG+ G IK++ E+T AR+KI P +TER V + GK +
Sbjct: 197 KVGSIIGRKGDVIKKIVEETRARIKILDG-PPGTTERAVMVSGKEE 241
Score = 33.9 bits (74), Expect = 0.27
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Frame = +1
Query: 244 SRAGCVIGKAGAKIKELREKTGARLKIF-SNQAPQ---STERIVQLVGKPDSI 390
S+AG +IGK G +K ++E + +++ S P +R+V++VG+P S+
Sbjct: 286 SQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSV 338
>At2g25970.1 68415.m03117 KH domain-containing protein
Length = 632
Score = 37.9 bits (84), Expect = 0.017
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +1
Query: 247 RAGCVIGKAGAKIKELREKTGARLKIFSNQ--APQSTERIVQLVGKPDSIIAGIREVLDL 420
R G +IGK G IK L+ ++GA++++ + P R V L G PD I + + D+
Sbjct: 144 RVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNCATRTVDLTGTPDQISKAEQLITDV 203
Score = 36.3 bits (80), Expect = 0.051
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Frame = +1
Query: 244 SRAGCVIGKAGAKIKELREKTGARLKIFSNQAP---QSTERIVQLVGKPDSI 390
++ G +IGK G IK ++ KTGAR+++ P + ER +Q+ G + I
Sbjct: 239 NKVGLIIGKGGETIKSMQAKTGARIQVIPLHLPPGDPTPERTLQIDGITEQI 290
>At1g51580.1 68414.m05806 KH domain-containing protein
Length = 621
Score = 37.1 bits (82), Expect = 0.029
Identities = 14/43 (32%), Positives = 28/43 (65%)
Frame = +1
Query: 244 SRAGCVIGKAGAKIKELREKTGARLKIFSNQAPQSTERIVQLV 372
+R G +IGK G+ I+ L+ TG+++++ + S ER+V ++
Sbjct: 28 TRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLII 70
Score = 33.1 bits (72), Expect = 0.47
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Frame = +1
Query: 253 GCVIGKAGAKIKELREKTGARLKIFS-NQAPQ---STERIVQLVGKPDSIIAGIREVL 414
G ++GK G I E+R TGA +++F+ +QA + + IVQ++G ++ + ++L
Sbjct: 372 GRLLGKGGHLISEMRRATGASIRVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQIL 429
>At5g15270.2 68418.m01789 KH domain-containing protein various
predicted proteins, Arabidopsis thaliana and Oryza
sativa
Length = 548
Score = 36.3 bits (80), Expect = 0.051
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +1
Query: 244 SRAGCVIGKAGAKIKELREKTGARLKIFSNQ----APQSTERIVQLVGKPD 384
SR GC++GK GA I E+R T A ++I + + +VQ+ G+ D
Sbjct: 379 SRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQISGELD 429
Score = 31.5 bits (68), Expect = 1.4
Identities = 11/46 (23%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Frame = +1
Query: 253 GCVIGKAGAKIKELREKTGARLKIFSNQ----APQSTERIVQLVGK 378
GC++G+ G ++ +R +TGA+++I ++ +++ ++Q+ G+
Sbjct: 159 GCILGRGGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGE 204
>At5g15270.1 68418.m01788 KH domain-containing protein various
predicted proteins, Arabidopsis thaliana and Oryza
sativa
Length = 548
Score = 36.3 bits (80), Expect = 0.051
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +1
Query: 244 SRAGCVIGKAGAKIKELREKTGARLKIFSNQ----APQSTERIVQLVGKPD 384
SR GC++GK GA I E+R T A ++I + + +VQ+ G+ D
Sbjct: 379 SRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQISGELD 429
Score = 31.5 bits (68), Expect = 1.4
Identities = 11/46 (23%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Frame = +1
Query: 253 GCVIGKAGAKIKELREKTGARLKIFSNQ----APQSTERIVQLVGK 378
GC++G+ G ++ +R +TGA+++I ++ +++ ++Q+ G+
Sbjct: 159 GCILGRGGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGE 204
>At5g53060.1 68418.m06592 KH domain-containing protein
Length = 652
Score = 35.9 bits (79), Expect = 0.067
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +1
Query: 244 SRAGCVIGKAGAKIKELREKTGARLKIFSNQAPQSTERIVQL 369
++AG VIGK+G IK +R+ TGA + + P ERI+++
Sbjct: 77 AKAGGVIGKSGTIIKSIRQHTGAWINV-HELVPGDAERIIEI 117
Score = 31.9 bits (69), Expect = 1.1
Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Frame = +1
Query: 253 GCVIGKAGAKIKELREKTGARLKIFSNQA--PQS---TERIVQLVGKPDSI 390
GC++GK G I+++R +T ++I ++ P+ +E IVQ+VG+ +++
Sbjct: 188 GCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAV 238
>At4g26000.1 68417.m03745 KH domain-containing protein
single-stranded nucleic acid-binding protein CBP -
mouse, PIR2:S78515
Length = 495
Score = 34.3 bits (75), Expect = 0.20
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +1
Query: 241 MSRAGCVIGKAGAKIKELREKTGARLKIFSNQAPQSTERIVQLVGKPD 384
+++ G +IG+ G IK++ E+T AR+K+ + +RIV + GK +
Sbjct: 82 VTKVGAIIGRKGDFIKKMCEETRARIKVLDGPV-NTPDRIVLISGKEE 128
Score = 29.5 bits (63), Expect = 5.8
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +3
Query: 21 IXTRGTNISKLRSQYKASITVPDCPGPERV---LSILTEDVDTLLEIVKEIL 167
I G NI+ +R + A+IT+ + P P+++ + T V T ++++E +
Sbjct: 356 IGVEGANIAYIRRRSGATITIKESPHPDQITVEIKGTTSQVQTAEQLIQEFI 407
>At5g46190.1 68418.m05681 KH domain-containing protein strong
similarity to unknown protein (pir||T04533)
Length = 644
Score = 33.5 bits (73), Expect = 0.36
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +1
Query: 253 GCVIGKAGAKIKELREKTGARLKIF-SNQAPQSTERIVQLVGKPDSIIAGIREVL 414
GC+IGK+G+ I E+R++T A + I N P+ + +LV + ++ +R+ L
Sbjct: 411 GCIIGKSGSIISEIRKRTKADIHISKGNNTPKCADPNDELV-EISGEVSNVRDAL 464
Score = 31.9 bits (69), Expect = 1.1
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +1
Query: 253 GCVIGKAGAKIKELREKTGARLKIFSNQAPQSTERIVQL 369
G VIGK+G I +R++T AR+K+ + P +ER++ +
Sbjct: 56 GSVIGKSGKVINLIRQETRARIKVV-DPFPGCSERVITI 93
Score = 31.1 bits (67), Expect = 1.9
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Frame = +1
Query: 244 SRAGCVIGKAGAKIKELREKTGARLKIFSNQA--PQST-----ERIVQLVGKPDSI 390
S+ VIGK+G+ IK +R +T A +K+ S P T + IV + G+ +S+
Sbjct: 159 SQCSIVIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESV 214
>At4g18375.2 68417.m02727 KH domain-containing protein contains
similarity to RNA-binding KH-domains PF:00013
Length = 606
Score = 33.5 bits (73), Expect = 0.36
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 253 GCVIGKAGAKIKELREKTGARLKIFSNQAPQSTERIVQLVGKPDSII 393
GCVIGK+G+ I E+R++T A + I + E ++ D++I
Sbjct: 407 GCVIGKSGSVINEIRKRTNANICISKGKKDDLVEVSGEVSSVRDALI 453
Score = 30.3 bits (65), Expect = 3.3
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +1
Query: 253 GCVIGKAGAKIKELREKTGARLKIFSNQAPQSTERIVQL 369
G VIGK+G I +R T A++K+F +Q ++R++ +
Sbjct: 48 GGVIGKSGKVINAIRHNTKAKIKVF-DQLHGCSQRVITI 85
>At4g18375.1 68417.m02726 KH domain-containing protein contains
similarity to RNA-binding KH-domains PF:00013
Length = 532
Score = 33.5 bits (73), Expect = 0.36
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 253 GCVIGKAGAKIKELREKTGARLKIFSNQAPQSTERIVQLVGKPDSII 393
GCVIGK+G+ I E+R++T A + I + E ++ D++I
Sbjct: 407 GCVIGKSGSVINEIRKRTNANICISKGKKDDLVEVSGEVSSVRDALI 453
Score = 30.3 bits (65), Expect = 3.3
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +1
Query: 253 GCVIGKAGAKIKELREKTGARLKIFSNQAPQSTERIVQL 369
G VIGK+G I +R T A++K+F +Q ++R++ +
Sbjct: 48 GGVIGKSGKVINAIRHNTKAKIKVF-DQLHGCSQRVITI 85
>At5g09560.1 68418.m01107 KH domain-containing protein various
predicted RNA binding proteins, Arabidopsis thaliana
Length = 563
Score = 33.1 bits (72), Expect = 0.47
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +1
Query: 241 MSRAGCVIGKAGAKIKELREKTGARLKIFSNQAPQSTERIVQLVGKPDSI 390
+S+AG VIGK G +K+L + T + + + S RI+++ G S+
Sbjct: 38 VSQAGHVIGKHGGMVKKLHKSTESSIWVEKTPLDDSPYRIIKIFGHVGSV 87
>At4g10070.1 68417.m01647 KH domain-containing protein DNA-directed
RNA polymerase (EC 2.7.7.6) II largestchain - mouse,
PIR2:A28490
Length = 725
Score = 33.1 bits (72), Expect = 0.47
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +1
Query: 244 SRAGCVIGKAGAKIKELREKTGARLKIF--SNQAPQSTERIVQLVG 375
S+ G +IGK G I+ L+ +GA+++I S P S R V+++G
Sbjct: 185 SKVGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSSALRPVEIIG 230
Score = 29.5 bits (63), Expect = 5.8
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 247 RAGCVIGKAGAKIKELREKTGARLKIFSNQAPQS--TERIVQLVG 375
+ G +IG+ G IK ++ ++GAR ++ A ER V++ G
Sbjct: 282 KVGLIIGRGGETIKNMQTRSGARTQLIPQHAEGDGLKERTVRISG 326
>At3g12130.1 68416.m01509 KH domain-containing protein / zinc finger
(CCCH type) family protein
Length = 248
Score = 32.7 bits (71), Expect = 0.62
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +1
Query: 244 SRAGCVIGKAGAKIKELREKTGARLKIFSNQAPQSTERIVQLVGKPDSIIAGIREVLDL 420
S AG +IGK G K++ +TG +L I ++ + + IV L G + I V DL
Sbjct: 123 SLAGAIIGKGGVSSKQICRQTGVKLSIQDHERDPNLKNIV-LEGTLEQISEASAMVKDL 180
>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
(CCCH type) family protein contains Pfam domains
PF00013: KH domain and PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 240
Score = 32.3 bits (70), Expect = 0.83
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +1
Query: 244 SRAGCVIGKAGAKIKELREKTGARLKIFSNQAPQSTERIVQLVGKPDSI 390
S AG +IGK G K++ +TGA+L I ++ + +I++L G + I
Sbjct: 123 SLAGAIIGKGGIHSKQICRETGAKLSIKDHERDPNL-KIIELEGTFEQI 170
>At2g03110.1 68415.m00264 KH domain-containing protein
Length = 155
Score = 31.1 bits (67), Expect = 1.9
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 253 GCVIGKAGAKIKELREKTGARLKIFSNQAPQSTER 357
G +IGK G I+ LR T A++++ ++ P TE+
Sbjct: 85 GYLIGKGGPIIQTLRNDTNAQIRVRNDNLPMCTEK 119
>At1g33680.1 68414.m04166 KH domain-containing protein similar to
FUSE binding protein 2 GB:AAC50892 GI:1575607 from [Homo
sapiens]
Length = 759
Score = 30.7 bits (66), Expect = 2.5
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +1
Query: 244 SRAGCVIGKAGAKIKELREKTGARLKI--FSNQAPQSTERIVQLVG 375
S+ G +IGK G ++ L+ +GA+++I + P S R V+++G
Sbjct: 241 SKVGTLIGKGGEMVRYLQVNSGAKIQIRRDAEADPSSALRPVEIIG 286
>At1g04970.2 68414.m00496 lipid-binding serum glycoprotein family
protein low similarity to SP|P17213 Bactericidal
permeability-increasing protein precursor (BPI) {Homo
sapiens}; contains Pfam profile PF02886: LBP / BPI /
CETP family, C-terminal domain
Length = 349
Score = 30.3 bits (65), Expect = 3.3
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 18 GIXTRGTNISKLRSQYKASITVPDCPGPERVLSILTED 131
G+ T+G L+S +K S+++ CPG ++L I ++
Sbjct: 112 GLFTKGETNQVLKSFFKKSVSLVICPGNSKMLGISVDE 149
>At1g04970.1 68414.m00495 lipid-binding serum glycoprotein family
protein low similarity to SP|P17213 Bactericidal
permeability-increasing protein precursor (BPI) {Homo
sapiens}; contains Pfam profile PF02886: LBP / BPI /
CETP family, C-terminal domain
Length = 488
Score = 30.3 bits (65), Expect = 3.3
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 18 GIXTRGTNISKLRSQYKASITVPDCPGPERVLSILTED 131
G+ T+G L+S +K S+++ CPG ++L I ++
Sbjct: 251 GLFTKGETNQVLKSFFKKSVSLVICPGNSKMLGISVDE 288
>At4g03500.1 68417.m00477 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 652
Score = 29.5 bits (63), Expect = 5.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 144 LEIVKEILPCLSDRGPKGDINDQDLDVRVLIH 239
L+++K IL C D+ K IN+QD++ +H
Sbjct: 361 LKVIKFILSCCKDKNKKKLINEQDVNGNTPLH 392
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,784,490
Number of Sequences: 28952
Number of extensions: 185815
Number of successful extensions: 470
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3884352576
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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