Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_E08_e157_10.seq
         (1503 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26474| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.3  
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.6  
SB_23073| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.6  

>SB_26474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = -3

Query: 214 HNRHGHHRHTDCVYYNSLCLHXLRM--PRPCRPHAP 113
           H +  HH+   C Y  +L    +R   PRP RP  P
Sbjct: 111 HRQSNHHKEYPCQYQQTLIETIIRQRNPRPSRPSIP 146


>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2179

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 298  WVSMYLARMLGGYFADTVSAGAAHSVKNHNRHGHHRHTD 182
            WV +Y AR L G     +S  +     +H+ H HH H D
Sbjct: 1230 WVYIYQARDLLGLDDSGMSELSLFWCHHHHHHHHHHHQD 1268


>SB_23073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 264

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 21/102 (20%), Positives = 38/102 (37%)
 Frame = -3

Query: 445 YYFPVTNXXXXXXXXXXXXXIVNKCINNSNDEMKDFVTKLVLLILWHSRWVSMYLARMLG 266
           YYFP T                +  I N+   +  F+ +++L    ++ + +   +    
Sbjct: 114 YYFPATTHLSCTHKTIG-----SSAIQNAGFLLITFIRQIILYPRSYAGYYTDNPSTTFF 168

Query: 265 GYFADTVSAGAAHSVKNHNRHGHHRHTDCVYYNSLCLHXLRM 140
            YF  T  +   H   N    G H+   CV    +C+H + M
Sbjct: 169 YYFPATTHSSCTHKRSNTAGSGPHQRAVCVRAVIVCVHKILM 210


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,016,266
Number of Sequences: 59808
Number of extensions: 585944
Number of successful extensions: 1054
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4871177455
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)