BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030712_E08_e157_10.seq (1503 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_26474| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.3 SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.6 SB_23073| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.6 >SB_26474| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 191 Score = 29.5 bits (63), Expect = 7.3 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%) Frame = -3 Query: 214 HNRHGHHRHTDCVYYNSLCLHXLRM--PRPCRPHAP 113 H + HH+ C Y +L +R PRP RP P Sbjct: 111 HRQSNHHKEYPCQYQQTLIETIIRQRNPRPSRPSIP 146 >SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2179 Score = 29.1 bits (62), Expect = 9.6 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = -3 Query: 298 WVSMYLARMLGGYFADTVSAGAAHSVKNHNRHGHHRHTD 182 WV +Y AR L G +S + +H+ H HH H D Sbjct: 1230 WVYIYQARDLLGLDDSGMSELSLFWCHHHHHHHHHHHQD 1268 >SB_23073| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 264 Score = 29.1 bits (62), Expect = 9.6 Identities = 21/102 (20%), Positives = 38/102 (37%) Frame = -3 Query: 445 YYFPVTNXXXXXXXXXXXXXIVNKCINNSNDEMKDFVTKLVLLILWHSRWVSMYLARMLG 266 YYFP T + I N+ + F+ +++L ++ + + + Sbjct: 114 YYFPATTHLSCTHKTIG-----SSAIQNAGFLLITFIRQIILYPRSYAGYYTDNPSTTFF 168 Query: 265 GYFADTVSAGAAHSVKNHNRHGHHRHTDCVYYNSLCLHXLRM 140 YF T + H N G H+ CV +C+H + M Sbjct: 169 YYFPATTHSSCTHKRSNTAGSGPHQRAVCVRAVIVCVHKILM 210 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 33,016,266 Number of Sequences: 59808 Number of extensions: 585944 Number of successful extensions: 1054 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 879 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1044 length of database: 16,821,457 effective HSP length: 85 effective length of database: 11,737,777 effective search space used: 4871177455 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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