Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_E08_e157_10.seq
         (1503 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.73 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   2.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   2.2  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   9.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   9.0  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.2 bits (55), Expect = 0.73
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 175 KRNRYVCGGRGDCGSLHCARHRRIPYPQSSRPASEL 282
           +R+R VC   G   + HC  HR   +  SS   S L
Sbjct: 112 RRHRPVCASNGKIYANHCELHRAACHSGSSLTKSRL 147


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 11/49 (22%), Positives = 21/49 (42%)
 Frame = +1

Query: 166 YYNKRNRYVCGGRGDCGSLHCARHRRIPYPQSSRPASELNTSTPNDYAI 312
           Y+   +R V   +GD  +LHC  H   P   +     ++  +   +Y +
Sbjct: 809 YFAAPSRLVTVKKGDTATLHCEVHGDTPVTVTWLKGGKIELNPSTNYRV 857


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 11/49 (22%), Positives = 21/49 (42%)
 Frame = +1

Query: 166 YYNKRNRYVCGGRGDCGSLHCARHRRIPYPQSSRPASELNTSTPNDYAI 312
           Y+   +R V   +GD  +LHC  H   P   +     ++  +   +Y +
Sbjct: 805 YFAAPSRLVTVKKGDTATLHCEVHGDTPVTVTWLKGGKIELNPSTNYRV 853


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = -3

Query: 217 NHNRHGHHRHTDCVYYNSLCLHXLRMPRP 131
           N+N + ++ +   +YYN + +  + +P P
Sbjct: 99  NNNNYNNNNYNKKLYYNIINIEQIPVPVP 127


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = -3

Query: 217 NHNRHGHHRHTDCVYYNSLCLHXLRMPRP 131
           N+N + ++ +   +YYN + +  + +P P
Sbjct: 99  NNNNYNNNNYNKKLYYNIINIEQIPVPVP 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 312,111
Number of Sequences: 438
Number of extensions: 6423
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52515375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)