BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030712_E08_e157_10.seq (1503 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g62330.1 68418.m07824 expressed protein 29 7.9 >At5g62330.1 68418.m07824 expressed protein Length = 170 Score = 29.1 bits (62), Expect = 7.9 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 5/38 (13%) Frame = -3 Query: 205 HGHHRHTDCVYYNSLCLHXL-----RMPRPCRPHAPGL 107 HG HRH +Y S LH + +P P R HA GL Sbjct: 19 HGCHRHRGRNFYKSTKLHSIFLQSYNVPIPVRGHALGL 56 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,758,592 Number of Sequences: 28952 Number of extensions: 397442 Number of successful extensions: 714 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 670 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 707 length of database: 12,070,560 effective HSP length: 84 effective length of database: 9,638,592 effective search space used: 4009654272 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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