Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_E07_e149_09.seq
         (1530 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5P501 Cluster: PE-PGRS family protein; n=1; Methylobac...    36   3.7  
UniRef50_A5K3B1 Cluster: Putative uncharacterized protein; n=3; ...    35   6.5  
UniRef50_O96209 Cluster: Putative uncharacterized protein PFB058...    34   8.6  

>UniRef50_A5P501 Cluster: PE-PGRS family protein; n=1;
            Methylobacterium sp. 4-46|Rep: PE-PGRS family protein -
            Methylobacterium sp. 4-46
          Length = 310

 Score = 35.5 bits (78), Expect = 3.7
 Identities = 29/87 (33%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
 Frame = -1

Query: 1491 PQXRXQXPXGGXGAXXGVQXPPXDFLRFXSPXXXXPXXGLXXRPCLPSGAXGGDGRALSF 1312
            P  R   P GG G   G   P   FLR        P   L  RP L  GA    G A  F
Sbjct: 53   PPRRQLLPDGGTGRPGGRPRPGGSFLRIRLAGGPPPQPLL--RPGLIPGALPRAGAAGGF 110

Query: 1311 PAXXGXPXXK--GNXGFPXXRXTRPGM 1237
            P     P  +     G P  R  RPG+
Sbjct: 111  PRQSPRPLPRRGRGGGLPADRVFRPGL 137


>UniRef50_A5K3B1 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 2952

 Score = 34.7 bits (76), Expect = 6.5
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
 Frame = -1

Query: 618 DYL*RHIFIIQVINNSG*LKLICMSINCL*NK*LLQTQYDKLQNRY--ISVVSNNLKRTM 445
           D L  HIFI +  N    L     + N L N   L   Y+ + N Y  +++  NN+KRTM
Sbjct: 664 DNLYAHIFIYKSKNRFEYLLPSQNTTNVLCNDEDLSMTYNNVNNNYQLVNLFINNIKRTM 723

Query: 444 MIQLTVIYSFDDCILLNTLLTFNRIDLLIERLIY 343
            I+    Y FD    +N +  F    + I  ++Y
Sbjct: 724 QIKNRFNYIFDK---VNGIFEFRSFIISIISILY 754


>UniRef50_O96209 Cluster: Putative uncharacterized protein PFB0580w;
            n=3; Plasmodium|Rep: Putative uncharacterized protein
            PFB0580w - Plasmodium falciparum (isolate 3D7)
          Length = 1224

 Score = 34.3 bits (75), Expect = 8.6
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
 Frame = +3

Query: 393  YLIKYSRRKNI---LLSVESSLFFLNY-CLQHLCIYFATCHTEFVIIIYFTNNLYSYRLV 560
            + I  +  KNI   +LS E  LF   Y CL  +  Y       F+ ++Y+ +N Y   L 
Sbjct: 970  FCITKTNIKNIFFEILSFELQLFESTYLCLTSVAAYVQI--NNFLNLVYYLSNSYGIILA 1027

Query: 561  SITHYYLSLE**KYAFRDNQNRNRVIQSRNVNSPVRVY 674
             +   Y+S +      R+  N+N+     N+  P++ Y
Sbjct: 1028 KLIGVYISSQ----RKREKDNQNKKYNEYNLKEPMKEY 1061


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,205,643,183
Number of Sequences: 1657284
Number of extensions: 22012454
Number of successful extensions: 35855
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35664
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 163328187375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)