Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_E07_e149_09.seq
         (1530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    31   0.56 
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    27   5.2  

>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 270 SRDGEKDLSKRSILNRFTKHRDPSDKSIFRSRGQ 371
           S DG + LSKR+  N  + HR P + + +R+RG+
Sbjct: 107 SLDGRR-LSKRNAANHASHHRMPDESASYRTRGE 139


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 637 YNLEMLTVLFEFTMDGCYNEFLSIVDIDNYTFFR 738
           YNLE+   LFE   D   NE L +  +++ TF R
Sbjct: 55  YNLELYQSLFEEFQDCFENEQLDVEWVESVTFHR 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,973,154
Number of Sequences: 5004
Number of extensions: 91808
Number of successful extensions: 160
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 858281342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)