Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_E07_e149_09.seq
         (1530 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0002 - 13567257-13567373,13568049-13568243,13569750-135698...    29   9.7  

>09_04_0002 -
           13567257-13567373,13568049-13568243,13569750-13569869,
           13569958-13570028,13570066-13570126,13570170-13570202,
           13570303-13570431,13571958-13572042,13572143-13572252,
           13572534-13572606,13572688-13572810,13573111-13573289,
           13573659-13573736,13573813-13573871,13574122-13574212,
           13574265-13574442,13574553-13575088
          Length = 745

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 586 LNNKNMPLEIIRTETG*YNLEMLTVLFEFTMDGCYNEF 699
           L  KN+ +E+ R E   Y+LE    L  F+ D CY  F
Sbjct: 590 LYQKNLDIEVCR-EALLYSLEHRVALVAFSQDDCYTTF 626


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,164,157
Number of Sequences: 37544
Number of extensions: 604174
Number of successful extensions: 833
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4919293792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)