Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_E07_e149_09.seq
         (1530 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30314| Best HMM Match : CBS (HMM E-Value=2.1)                       30   5.6  
SB_1337| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   7.5  

>SB_30314| Best HMM Match : CBS (HMM E-Value=2.1)
          Length = 869

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
 Frame = -1

Query: 564 LKLICM-SINCL*NK*LLQTQYDKLQ-NRYISVVSNNLKRTMMIQLTVIYSFDDCILLNT 391
           L + C+ SINCL +  LL T    L  NR +S+ +  L    ++ +  + S +  + +N 
Sbjct: 666 LSINCLLSINCLLSINLLLTINLLLTINRLLSI-NRLLSINCLLSINCLLSINLLLTINL 724

Query: 390 LLTFNRIDLLIERLI 346
           LLT NR+ L I RL+
Sbjct: 725 LLTINRL-LSINRLL 738


>SB_1337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -1

Query: 582 INNSG*LKLICMSINCL*NK*LLQTQYDKLQNRYISVVSNNLKRTMMIQLT 430
           IN+S  +  + +S+ C  +  LL   Y +L NRY  + S++L   + + +T
Sbjct: 101 INSSSLVTRLPLSVTCYRHSPLLVNHYSQLVNRYPKINSSSLVTCLPLSVT 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,227,433
Number of Sequences: 59808
Number of extensions: 674083
Number of successful extensions: 1118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4976817448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)